Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02575 ATGGTGGGTTCCGAGACTCCAAGTCCAAACGGTGCTTCACCGCCGCCACCTCAACAAGAGAAGAAGCATGGGATCACAAAACCCCTCTCTCTTGCGGGTCCCACCGAGGCGGATTTCCATCGCAACAAGGAACTGGAGAGGTTTTTGGTTGATTCTGGTCTTTACGAGAGCAAAGAAGAAGCTGCAAAGAGAGAAGAGGTCCTTGGGCGCCTTGACGAGATCGTAAAAAGCTGGGTGAAGCAGTTGACCCGCCAACGAGGCTACACAGACCAGATGGTGGAGGATGCAAATGCtgtcatttttacttttggttCCTACAGACTAGGGGTACATGGACCTGGAGCTGACATCGACACTTTATGTGTTGGTCCTTCTTATGTGAATCGTGAGGAAGACTTCTTTATCATTTTGCATAACATCCTAGatgaaatggaagaaattaCTGAACTTCAACCAGTTACTGATGCTCATGTCCCAGTAATGAAATTCAAGTTCCAGGGAATATCAATAGATTTGCTCTATGCAAGTATATCACGTTTGGTTGTTCCACAAGACCTTGATATATCGAATGAGTCTGTGCTGTATGATGTTGATGAGCCAACTGCTCGGAGTCTTAATGGCTGCCGGGTGGCAGATCAAATTCTCAAGCTTGTTCCAAATGTTGAGCACTTCTGCACTACACTGAGATGCTTAAAATTTTGGGCTAAAAGGCGTGGTGTTTATTCAAATGTTACTGGATTCCTTGGCGGTGTAAATTGGGCTCTTTTAGTTGCTCGAGTTTGCCAGCTTTATCCTAATGCAATTCCTAGTATGTTGGTTTCTCGGTTCTTCAGGGTATATACACAGTGGCGGTGGCCAAACCCTGTAATGCTATGTGCTATAGAAGGGAATGAACTGGGTTTCGCTATGTGGGATCCTCGTAGAAATCCTCGTGACAGATTTCATCACATGCCAATAATTACTCCTGCATACCCTTGCATGAATTCCAGCTATAATGTCTCAGCAAGCACTCTTCGTGTTATGGTGGAACAGTTTCGTCGTGGTAACAGGATATGTGAGGAAATTGAACTTAACAAAGCCCAGTGGAGTGCTCTTTTTGAGACTTATCCCTTTTTTGAGGCATACAAAAACTATTTACAAGTGGACATAGTTGCAGTAGATGCTGATGATTTACTTGCTTGGAAAGGCTGGGTAGAATCTCGGTGGAGACAGCTTACCTTGAAGATAGAGCGGGACACAAATGGGATGTTACAATGCCATCCTTATCCACATGAGTATGCGGACTCCTCAAAGCCTTGTCCACATAGTGCCTTCTTCATGGGCTTACAAAGGAAAGAGGGAGTCAGAGGTCAAGAAGGGCAGCGATTTGATATACGTGGAACGGTTGATGAATTCAGGCAAGAGATAAACATGTACTTATATTGGAAACCAGGGATGGAAATCTATGTTTCTCATGTTCATCGAAAGCAGCTTCctgcatttctttttccagatGGTTATAAAAGGACTCGGATATCAAGGCATATAAACTGTTCTACTGAGAAAATGGGTGAAGACACAAAGTGCCATTCTGGGTCTGCTGAAAGGTGCATCAAGAGGAAAAATGATCCTGAAATGGTTGATGAGAAGCCAGGAAAGCCAGAGAAGCGGGCCTCCATTAGCCCACAGAGGATAGATTCTGTCTTGCCAGAAAGCATAATTAGTAGATCTGGTGCTGCATCTCAGATGAGTATTAATTCTATAGAAGGAATTAGGTTAGGAAGTTCAACAACCATCGATGCAGATAACAATTCTGAAACTACGTCGTCTGATGGATGCCTAGGAGGCGCAATGGGTACTTTAGGGAATAACAGGCAGAGTAGTAAAACGGGTGGCGGTGAATCCACActaattgaacaaaaatctAGAAGCCCAGAAGTTCAGAATGAGAATGGAGTCAGTGGGTACAAAGTTCAGAATTTGGATTTAGATTGCTTGGGAAGTGCTGAGAGTTCATCTACCAAAACCTTGCTGAACTGTAAAGGGGGTGCTGTTGATATGGATCAACGACTAGTCAAAGTTTGTAATTTGACAAGGGCTGAAAATGCAGAATATGTACCAAGTGCTGGTGCCCAGAACCTCAATCATGAGGGTGATATTTGTGTGGCAGATCCAGATACTATTTTGAAGAGTGGATGTTTAGATGGAAAAAGGCCAGATATATCAGGCTCGGTAGTGTCCTATAACCTCAAGATGGAGCTAGGAAAATG 2249 0.4282 MVGSETPSPNGASPPPPQQEKKHGITKPLSLAGPTEADFHRNKELERFLVDSGLYESKEEAAKREEVLGRLDEIVKSWVKQLTRQRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVGPSYVNREEDFFIILHNILDEMEEITELQPVTDAHVPVMKFKFQGISIDLLYASISRLVVPQDLDISNESVLYDVDEPTARSLNGCRVADQILKLVPNVEHFCTTLRCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEGNELGFAMWDPRRNPRDRFHHMPIITPAYPCMNSSYNVSASTLRVMVEQFRRGNRICEEIELNKAQWSALFETYPFFEAYKNYLQVDIVAVDADDLLAWKGWVESRWRQLTLKIERDTNGMLQCHPYPHEYADSSKPCPHSAFFMGLQRKEGVRGQEGQRFDIRGTVDEFRQEINMYLYWKPGMEIYVSHVHRKQLPAFLFPDGYKRTRISRHINCSTEKMGEDTKCHSGSAERCIKRKNDPEMVDEKPGKPEKRASISPQRIDSVLPESIISRSGAASQMSINSIEGIRLGSSTTIDADNNSETTSSDGCLGGAMGTLGNNRQSSKTGGGESTLIEQKSRSPEVQNENGVSGYKVQNLDLDCLGSAESSSTKTLLNCKGGAVDMDQRLVKVCNLTRAENAEYVPSAGAQNLNHEGDICVADPDTILKSGCLDGKRPDISGSVVSYNLKMELGK 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02575 749 MobiDBLite consensus disorder prediction 533 553 - -
Bva06g02575 749 Pfam Poly(A) polymerase central domain 24 367 IPR007012 GO:0004652|GO:0043631
Bva06g02575 749 PANTHER POLY A POLYMERASE 13 567 - -
Bva06g02575 749 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 369 496 IPR011068 GO:0003723|GO:0016779|GO:0031123
Bva06g02575 749 Pfam Poly(A) polymerase predicted RNA binding domain 371 429 IPR007010 GO:0003723|GO:0043631
Bva06g02575 749 MobiDBLite consensus disorder prediction 1 38 - -
Bva06g02575 749 CDD NT_PAP_TUTase 63 218 - -
Bva06g02575 749 SUPERFAMILY Nucleotidyltransferase 21 217 IPR043519 -
Bva06g02575 749 MobiDBLite consensus disorder prediction 533 559 - -
Bva06g02575 749 SUPERFAMILY PAP/OAS1 substrate-binding domain 219 367 - -
Bva06g02575 749 MobiDBLite consensus disorder prediction 591 645 - -
Bva06g02575 749 Gene3D Beta Polymerase, domain 2 56 212 IPR043519 -
Bva06g02575 749 Pfam Nucleotidyltransferase domain 97 169 IPR002934 GO:0016779
Bva06g02575 749 Gene3D - 24 366 - -
Bva06g02575 749 PANTHER NUCLEAR POLY(A) POLYMERASE 4 13 567 - -
Bva06g02575 749 Gene3D Poly(A) polymerase predicted RNA binding domain 370 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02575 Bva-Chr6 16268180 16273657 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02575 K14376 - gmx:100819294 1082.01