Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02553 ATGGCTTCCAGTTTCACAGTGTTGCCGGTGATCAGAAAGTCTCTTTCACATCCAACCATGGTGGCTTCTGGTTATAATAACAAGGAAGAGTTTTCATTTGGGAATAAGTCCATCTTCAAAAGCCAACGCGATATTCTTCAAGATCGCTTGGCCGTCGCCAATGTTGCGCATACACTACCTGTGGTTACTCCGCCGCTGCCACCACCACCGGAAAGCTCCGGAAGCAATGAATGGCGCCACCATGTTGCATGGACTAGTATCCTGCAAGAGAGATGGGAAGGAGAGCTAGTAGTTGAAGGACAGATACCACGATGGCTGAACGGAACGTACCTAAGGAATGGCCCAGGGCAGTGGCAAATTGGGGACTACAAGTTCAGGCACCTGTTTGATGGCTATGCAACTCTGGTGAAGCTCCAGTTTCAGAATGACCGGTTAATCGCCGGCCACCGCCAAATTGAATCGGAAGCCTATAAAGCTgcaaagaagaataaaaaaatatgttaccGCGAATTTTCTGAAGTTCCAAAGCCAGCTAATTTCTTGGCCTACATGGGGGAGCTTGCTAATTTGTTCTCCGGTGCTTCATTGACAGACAATGCTAACACGGGTGTGGTGAAGCTGGGTGACGGGCGGGTGGTTTGCCTGACCGAGACCCAAAAAGGGTCCATAGTGATTGAACCGGAAACGTTGGACACGTTGGGCAAATTCGAATACACCGATTCATTAGGAGGTCTACTACACTCGGCACACCCAATTGTGACGGATTCTGAATTTTTGACGCTATTACCAGACCTGATAAAACCGGGTTACCTGGTAGTGAGGATGGAGCCCGGGACCAATGAACGGAAGGTGATCGGGCGGGTGGATTGTCGGGGCGGGCGATCCCCCGGGTGGGTCCACTCTTTCCCAGTGACTGAACACTACGTGATTGTGCCAGAAATGCCATTGAGATATTGTGCCAAAAATTTGCTGAAGGCTGAGCCCACACCATTATACAAGTTTGAGTGGCACCCAGAGTCAAAAGGGTATATGCATGTTATGTGCAAGGCCAGTGGCAACATTGTAGCAAGCGTGGAGGTGCCTGTGTTCATAACATTCCATTTCATAAATGCATATGAGGAGAAAGATGAAGATGGAAGAGTAACGGCAGTGATAGCAGACTGCTGTGAACACAATGCAAACACCACCATTCTCGACAGGCTTAGGCTACAGAATCTACGCTCGTTCAACGGCGAAGATGTGCTACCAGATGCTAGGGTTGGACGGTTCATAATACCATTGGATGGGAGTGCACATGGCAAGTTAGAGGCAGCATTAGAGGCAGATGAACATGGGAGAGGCATGGACATGTGCAGCATCAACCCTAACTTTCTGGGAAAAAAGTACAGATATGCTTATGCATGTGGAGCGCAGCGCCCCTGTAACTTCCCCAACACTCTCACAAAGCTTgattttgtgaagaaaaaGGCAACAAACTGGTATGATGAAGGTGCTGTTCCCTCAGAACCATTCTTTGTGGCAAGACCTGGAGCAACTGAGGAAGATGACGGTGTGGTAATTTCCATAATCAGTGAGAAAAATGGAGGAGGATATGCGTTACTGTTAGATGGTTCCACCTTCCAAGAGATTGCCAGAGCTAGGTTACCTTATGGACTGCCATACGGCTTGCATGGATGCTGGGTtccaaacaaata 1694 0.4746 MASSFTVLPVIRKSLSHPTMVASGYNNKEEFSFGNKSIFKSQRDILQDRLAVANVAHTLPVVTPPLPPPPESSGSNEWRHHVAWTSILQERWEGELVVEGQIPRWLNGTYLRNGPGQWQIGDYKFRHLFDGYATLVKLQFQNDRLIAGHRQIESEAYKAAKKNKKICYREFSEVPKPANFLAYMGELANLFSGASLTDNANTGVVKLGDGRVVCLTETQKGSIVIEPETLDTLGKFEYTDSLGGLLHSAHPIVTDSEFLTLLPDLIKPGYLVVRMEPGTNERKVIGRVDCRGGRSPGWVHSFPVTEHYVIVPEMPLRYCAKNLLKAEPTPLYKFEWHPESKGYMHVMCKASGNIVASVEVPVFITFHFINAYEEKDEDGRVTAVIADCCEHNANTTILDRLRLQNLRSFNGEDVLPDARVGRFIIPLDGSAHGKLEAALEADEHGRGMDMCSINPNFLGKKYRYAYACGAQRPCNFPNTLTKLDFVKKKATNWYDEGAVPSEPFFVARPGATEEDDGVVISIISEKNGGGYALLLDGSTFQEIARARLPYGLPYGLHGCWVPNK 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02553 564 Pfam Retinal pigment epithelial membrane protein 90 562 IPR004294 GO:0016702
Bva06g02553 564 PANTHER BETA-CAROTENE DIOXYGENASE 44 563 IPR004294 GO:0016702
Bva06g02553 564 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE-RELATED 44 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02553 Bva-Chr6 16156281 16161157 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02553 K17913 - gmx:100814148 918.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02553 06 16156281 16161157 Bva06g02553 06 16156281 16161157 ECH