Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02482 ATGGAACCCTATGCCTCCTCCTCTCAGATAGCACAGAAAACTTGGGAGCTTGAAAACAATATAGTCCCAATGGACACTCCCCCATTCACAACAAACAACGCCGACCCAGCTTCTGACGCCATCTTCTACTACGACGAGGGCGCCCAAAACGAATTCCAGAGGGAGAAGCCATGGGTAAACGACCCCCACTACTTCAAGCGTGTTAAGATCTCCGCTCTTGCTCTGCTCAAGATGGTTGTCCATGCTCGCTCTGGTGGCACTATTGAGGTCATGGGCCTTATGCAAGGCAAGACCGACGGcgatgccatcatcgtcatgGACGCCTTTGCCTTGCCTGTTGAAGGCACCGAGACccgtgtcaacgcccaagcggATGCCTATGAATATATGGTTGATTATTCCCAGACTAACAAGCAGGCGGGACGATTGGAGAATGTTGTTGGATGGTATCATTCTCATCCTGGTTATGGATGCTGGCTTTCGGGTATTGATGTATCTACACAAATGCTAAATCAGCAATTTCAGGAGCCATTCCTTGCAGTTGTAATTGACCCAACAAGGACTGTTTCTGCTGGAAAAGTCGAGATTGGTGCATTCAGGACATACCCAGAAGGATATAAGCCTCCAGATGAACCTATCTCTGAGTACCAGACCATCCCCCTTAATAAGATAGAAGACTTTGGTGTTCACTGTAAGCAGTATTATGCATTGGATATCACTTACTTTAAGTCTTCTCTTGATTCACACCTATTGGATCTGCTATGGAACAAATATTGGGTGAACACGCTATCATCTTCTCCTTTATTGGGTAATGGAGACTACGTTGCTGGACAAATCTCAGATCTAGCTGAAAAGCTAGAACAAGCCGAGAATCAGTTGGCGCACTCACGCTTTGGGCCACTATTAGCACCTCCTCCAAGAAAGAAGGAAGAAGAATCTCAACTTGCTAAGATCACTCGTGATAGTGCAAAAATAACTGTGGAGCAAGTGCATGGTCTGATGTCACAGGTCATCAAGGACATCCTTTTCAATTCTGTGCGTCAAGCGAACAGGTCTCACACAGATTCATCGGGCCCTGAACCAATGATTGAGAGCTG 1097 0.4467 MEPYASSSQIAQKTWELENNIVPMDTPPFTTNNADPASDAIFYYDEGAQNEFQREKPWVNDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDGDAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFGPLLAPPPRKKEEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQANRSHTDSSGPEPMIES 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02482 365 Pfam Cop9 signalosome subunit 5 C-terminal domain 264 344 IPR040961 -
Bva06g02482 365 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 29 359 - -
Bva06g02482 365 PANTHER BNAC07G13420D PROTEIN 29 359 IPR037740 GO:0004222|GO:0008180
Bva06g02482 365 ProSiteProfiles MPN domain profile. 68 205 IPR037518 -
Bva06g02482 365 CDD MPN_RPN11_CSN5 57 329 - -
Bva06g02482 365 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 65 176 IPR000555 GO:0005515|GO:0008233|GO:0008237
Bva06g02482 365 Gene3D Cytidine Deaminase, domain 2 4 270 - -
Bva06g02482 365 SUPERFAMILY JAB1/MPN domain 67 204 - -
Bva06g02482 365 SMART pad1_6 67 204 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02482 Bva-Chr6 15778517 15781979 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02482 K09613 - csv:101206031 683.33