Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02446 ATGTCCAACAATATGGTTTCACAACAACTGCCAATATCAAGCATGCAGATAGCTCAGATGGAGCCCATGGTGACCAAAGTTGATTCATCAGGGAGAGACTTGCAAATGGGACTCTTGGCCCCTGTTTCCAGTGATGCTATGTCACAGCAACAGACAATATCAAATGATCAAGTTGGATTGTTGAGAGCGATGTCTGGTAGTATGGGGTCTCAGGGGTTGTCAACGTCATTTATGCAGAGTGGACAGGTAGAATCACGCACAAGTAATTTGGCTGTGCATCAGCTTTTTACGCCTAACAGACAAACTATGCAAATGGAGACAATGATGAACAGTGTGGGGCATCAGCAATTGTCAGTGACACCAAAGCGGAAGGCACCAATGGAACTGTTGTCCGGTAGTTACATGAATTCTAACAAGCGGGTTGCACAGATGGAATATAGGCCATGGTTCCAGCAAGTTTCTACATCAAATAAAGGTGCTTTGCCTGTACAACCCTTGTCAAATGCCCCCAGACCGCAGCCTTTACCAGCATCTGGTAAGAAGAAAACACAGATGGAGCCCACGTCCAGTAAATCAGGGACACCACGTTCCTTGAATTCTAAAAGTCAGAATGCACAGGTGCGACAGTCTTCTAAGGTTCAATCTGAGTCATCTGAATCTGTTAGGTCCAAGATGAGGGAGTCATTAGCTGCAGCACTGACCTTAGTTTCTCAGCAAGATAAACTTCAGGTTGGAAACAGTAATACATTGAATGAGGCCGCTAGTCCTCAGGGTAAAGTAGAGAACAATTCTCAATGCGCTGGGTCAGCATCTGCTGCCACAGATGCATCTCAGTGGCCAAAGCAGGAGACTTTTCAATCTGGTGATTCATCTTCTGGTGCAAGTGGTTCAGTTGATCATGTACTTGGAGAGCATAGTTCAACCTCTAATGAAGATTTGTCTTCTGCAAAATTGAACAGCGAAGCTGACACCGGAAACGTgtcaaataatgaaatgataCTACATACTTTGGAAGTCTCTAATTCTGATGCACAAGACTTCAGCTCAAGTTACCCTTTGACCATTGATGATGTTCCTTTCAGTGATAATTTCTTTGTCAAAGATGAACTCTTGCAGGGAAATGGTCTTTCCTGGGTAATGGAATCAGAGATGGGAATGACAGACCAAAAGGAAAGTCAAACTAATGAAGAGCAGAGGCCAGAACATGGGGAAGTAGGTACTGGTTGTAAGGAACATGCAGTTCGTTCACCTGAATTTCTGGCGTCAAGGATAGAAGAGGaacttttcaaattatttggaGGTGTCAATAAGAAGTATAAAGAGAAAGGGAGGtctcttttattcaatttgaagGATCGTAATAATCCTGCACTGAGAGAAAGGGTTATGTCTGGTGAAATCCCCCCTGAAAGACTATGTTCAATGACTGCAGAGGAACTTGCTTCGGAGGAGCTTTCTCAATGGCGGATAGCCAAGGCTGAAGAGCTTGCTCAAATGGTGGTTTTGCCTGATGATGTTGATCTTAGACGTTTGGTCAAGAAAACACACAAAGGTGAATTTCAAGTGGAAGTTGAACATGATGACAGTGTTTCAGTGGTGGTTTCTGGTGGTGCAACCTCGGCTGCTCAAAGTCAGACAAAAAGTAAGGATGTGGAAACCCCTCCTCCTTCTAACATTGAGAAGATTAAAAGTGATACGAACTCAGCTACTGAGAATAGTAATTTAGACAAAGATAATCCACCTCGTCTAACCATTCCTTCCAATGATGGGACTGATCCGATGCACGGGCTTATGGCAGATGATGCATTGAAGGATACGAATTTTCTTCCCCCAATTGTTTCACTTGATGAGTTCATGGAATCACTTCATTCAGAGCCACCGTTTGAAAGTGTATCAATGGAATCAGGAAAATCTATACCTGTCTCGGACAAGGATGACTCTGAGGGTGTTTCTGAACTGAAGTCTTCCAAGTTAACTCCAAATGAGCATGATGATGACACCCCTGATAAATCTGAGAAAGTACATAAGGACACTTACTCAAATGTGGAGGCCGATCTCAAAAAAGAGGTCAGTTCAGAACCTGGGGCCATTACTTCTGATGGTCTTGGTGACATAAAGTTAACTGACGATCATGCTGATTTGAAGCTTGCTGATGTTAATGCTGAGGTAAGGTCAACTGATGACACAAAGTCTGCTTCAAGTCGTGCTGATTTGGAAGTTAGTCAGGGACGTTCAGAAGAGAGATATAGCTATAGGCATTCTGGTTTCCAAACGACACTCTCCCCTGGTGTATCCAAGGGTGAATCTATCTGGGAGGGCACGCTTCAGCTGAATATCTTGGCTACTCAACCAGTCATAGGCATCTTTAAAAGCGGTGAGAAAACTTCTGTGAAAGACTGGCCTAGATTTCTTGAGATCAAGGGGAGGGTCAGACTCGATGCATTTGATAAGTTTCTGCAAGAGCTACCAATGTCCAGGAGTCGTGCTATCATGGCTGTGCATTTTGTTTCAAAGGAGTCGTCCCCCAAGAATGAGAAGTCAACCCTCCGTGAGGAGGCAGATTCATACATTTTGGACGATAGAGTGGGTTTTGCTGAGCCTGTGCCTCGAGTTGAGCTTTACTTTTGcccaccaaataaaaaaacagtTGAAATGCTCAGCAAAGTACTTTCAAAGGAACAAATTGAGGCATTTAATGCAATTGATAATGGTCTAATTGGTGTTATTATATGGAGAAAGACTCATTTAACTTCCATTGTGTCACCCACCTCATCATCACACCACAAACATAGCTCTAAAAAGCAAAACTTTTCATCTAGGAGACAGCAAGATGCAAATATGAATCCCAATCTCTCACCCAAACCAGGCCCCGCAAAGGGCTTTACAATCACTGACACTAGACCTACatctgatgatgatgatattcCTCCTGGTTTTGGGCCAGCGGTGGCTCGAGATGAGGATGACCTCCCGGAGTTCAATTTCTCTGGTGGGGTGAATCCGTCGCCACGCATGGCCCAAAAACCTATCGGACCACCAGGTTTGGTCCCATTCCCTTCGGTTAATCAAACCACTTCGCGCCCTTTAGAACAAATGAGGGAGCTTGTACACAAATATgggcaaaacaaaacaactgtACCTCCTCCAGGTAACTGGCAGGATAAATTTGGAGCGACAATACAACCTTGGAAtgacgatgatgatgatattCCTGAATGGCAGCCTCAAACCCTCCAGAACCAGTTTCCTACACAACAACAGCATACTATACCTCATTCGGTGAATCAATCCTATCAGCCAATGATGCCTATGCAATCTCGACAACCTCCATTGAATGTGACgcaacaaaattttgttcctCAGCGGGTTCCTTCTGCCCAGGGAAATATCTTACCAGTGCAAGGTGTTGCTTGGCGTCAAAATATTCCTAGAAGTAggggtttata 3446 0.424 MSNNMVSQQLPISSMQIAQMEPMVTKVDSSGRDLQMGLLAPVSSDAMSQQQTISNDQVGLLRAMSGSMGSQGLSTSFMQSGQVESRTSNLAVHQLFTPNRQTMQMETMMNSVGHQQLSVTPKRKAPMELLSGSYMNSNKRVAQMEYRPWFQQVSTSNKGALPVQPLSNAPRPQPLPASGKKKTQMEPTSSKSGTPRSLNSKSQNAQVRQSSKVQSESSESVRSKMRESLAAALTLVSQQDKLQVGNSNTLNEAASPQGKVENNSQCAGSASAATDASQWPKQETFQSGDSSSGASGSVDHVLGEHSSTSNEDLSSAKLNSEADTGNVSNNEMILHTLEVSNSDAQDFSSSYPLTIDDVPFSDNFFVKDELLQGNGLSWVMESEMGMTDQKESQTNEEQRPEHGEVGTGCKEHAVRSPEFLASRIEEELFKLFGGVNKKYKEKGRSLLFNLKDRNNPALRERVMSGEIPPERLCSMTAEELASEELSQWRIAKAEELAQMVVLPDDVDLRRLVKKTHKGEFQVEVEHDDSVSVVVSGGATSAAQSQTKSKDVETPPPSNIEKIKSDTNSATENSNLDKDNPPRLTIPSNDGTDPMHGLMADDALKDTNFLPPIVSLDEFMESLHSEPPFESVSMESGKSIPVSDKDDSEGVSELKSSKLTPNEHDDDTPDKSEKVHKDTYSNVEADLKKEVSSEPGAITSDGLGDIKLTDDHADLKLADVNAEVRSTDDTKSASSRADLEVSQGRSEERYSYRHSGFQTTLSPGVSKGESIWEGTLQLNILATQPVIGIFKSGEKTSVKDWPRFLEIKGRVRLDAFDKFLQELPMSRSRAIMAVHFVSKESSPKNEKSTLREEADSYILDDRVGFAEPVPRVELYFCPPNKKTVEMLSKVLSKEQIEAFNAIDNGLIGVIIWRKTHLTSIVSPTSSSHHKHSSKKQNFSSRRQQDANMNPNLSPKPGPAKGFTITDTRPTSDDDDIPPGFGPAVARDEDDLPEFNFSGGVNPSPRMAQKPIGPPGLVPFPSVNQTTSRPLEQMRELVHKYGQNKTTVPPPGNWQDKFGATIQPWNDDDDDIPEWQPQTLQNQFPTQQQHTIPHSVNQSYQPMMPMQSRQPPLNVTQQNFVPQRVPSAQGNILPVQGVAWRQNIPRSRGL 1148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02446 1148 MobiDBLite consensus disorder prediction 160 225 - -
Bva06g02446 1148 MobiDBLite consensus disorder prediction 625 704 - -
Bva06g02446 1148 Pfam SPOC domain 765 911 IPR012921 -
Bva06g02446 1148 MobiDBLite consensus disorder prediction 182 218 - -
Bva06g02446 1148 ProSiteProfiles TFIIS central domain profile. 394 508 IPR003618 GO:0006351
Bva06g02446 1148 MobiDBLite consensus disorder prediction 390 409 - -
Bva06g02446 1148 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 34 1126 - -
Bva06g02446 1148 SMART mid_6 392 491 IPR003618 GO:0006351
Bva06g02446 1148 SUPERFAMILY Elongation factor TFIIS domain 2 412 484 IPR036575 GO:0006351
Bva06g02446 1148 Gene3D - 390 483 IPR036575 GO:0006351
Bva06g02446 1148 MobiDBLite consensus disorder prediction 537 598 - -
Bva06g02446 1148 MobiDBLite consensus disorder prediction 639 690 - -
Bva06g02446 1148 MobiDBLite consensus disorder prediction 386 409 - -
Bva06g02446 1148 MobiDBLite consensus disorder prediction 537 586 - -
Bva06g02446 1148 Pfam Transcription factor S-II (TFIIS), central domain 398 496 IPR003618 GO:0006351
Bva06g02446 1148 MobiDBLite consensus disorder prediction 921 1014 - -
Bva06g02446 1148 PANTHER SPOC DOMAIN / TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN 34 1126 - -
Bva06g02446 1148 MobiDBLite consensus disorder prediction 249 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02446 Bva-Chr6 15627482 15633171 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02446 - - gmx:100808809 1207.97