Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02380 ATGAAGCAGAGTTCGTCTGAGGCAGTCGCGTCTTTATCTTCTGCATCCACTTCAACAGACCAATCACATGCTGCCACTTCATCATCGTCGTTGGCGTCATCGGAGAAACCCGGCACCTTAGTGTCGTCAGCGGCCGCCGCAGAGGACTTGGCTATGGGGTCAAGGGATGGAGGCGGTGCCCAAGAGACGGTGACCGTCGATCGTCGGGGTGAGTACTCCGCCGTTTGCCGATGGACGGTACATAATTTTCCAAGAATAAAAGCTAGGGCACTATGGAGCAAGTACTTCGAGGTCGGAGGCTATGATTGCCGCCTCTTGATATACCCCAAGGGTGACTCCCAGGCTTTGCCAGGCTACATCTCCATCTACCTCCAAATCATGGACCCTCGGGGCACTTCGTCTTCCAAATGGGACTGTTTTGCTAGCTATCGTTTAGCAATCGTGAACATGGCCGACGATTCCAAGACCATTCATCGGGATTCGTGGCACCGGTTCTCAAGTAAGAAAAAATCTCACGGGTGGTGTGATTTTACGCCTTCCTCAACTGTATTTGATCCAAAATTGGgttatttgtttaataatgATTCCGTATTGATAACCGCTGATATACTCATTCTCAATGAGTCGGTTAATTTCACTCGAGATAACAATGAGTTGCAATCATCAGCATCATCTATTATATCTTCCTCTGTGGTTGCGGGACCAGTGTCCGATGTCTTGAGTGGAAAATTCACTTGGAAAGTGcataattttagtttgtttaaggaaatgataaaaactcaaaagatAATGAGCCCGGTTTTTCCAGCTGGGGAGTGTAATTTGAGAATTAGTGTATATCAGAGCTCGGTTAATGGGGTTGAATATCTGTCAATGTGTTTGGAAAGCAAGGATACGGACAAGACGGTGATGTTGTCTGATAGGAGTTGCTGGTGCTTATTTCGAATGTCAGTCTTGAACCAGAAGCCAGGCTCGAATCACATGCATAGGGATTCTTATGGGCGGTTTGCAGCTGATAATAAAAGCGGGGACAACACGAGCCTGGGATGGAATGACTATATGAAGATGTCAGATTTTATTGGACCTGATTCAGGGTTTTTGGTAGATGACACTGCAGTTTTTAGTACTTCATTTCACGTGATAAAGGAGTTTAGTAACTTCTCTAAGAATGGGGGTTTAATTGCTGGGAGAAGTGGGAGCGGCGCTAGGAAATCAGATGGCCATATGGGCAAGTTCACTTGGAGGATTGAGAATTTTACAAGGTTGAAGGATttgttgaagaaaaggaaaattacgGGTCTATGTATCAAGAGCAGACGATTTCAAATTGGGAACCGAGATTGCCGTCTCATTGTTTATCCCCGAGGGCAGTCTCAGCCACCATGCCACCTTTCAGTATTTCTTGAAGTTACGGATTCTAGAAATACTTCCAGTGATTGGAGTTGTTTTGTGAGTCACCGATTGTCTGTTGTGAACCAGAGGATGGAGGAGAAGTCTGTCACCAAAGAATCTCAGAACCGTTACTCAAAAGCTGCTAAGGATTGGGGCTGGCGTGAATTCGTGACACTAACAAGCCTCTTTGATCAAGATTCTGGTTTTCTTGTTCAAGACACTGTTGTATTCTCTGCAGAAGTTCTTATATTGAAAGAGTCATCAATAATGCAGGATTTTGCTGATCATGATGCGGAGTTAAGCAGTAGTGGTTCCCTTGTTGATAGGTATGCAAAAAGAAGTTCATTTACATGGAAAGTGGAGAATTTCCTGTCTTTTAAGGAAATAATGGAGACCCGGAAAATCTTCAGTAAATTCTTTCATGCTGGTGGATGTGAGCTTCGGATTGGTGTTTACGAGTCATTTGACACCATATGCATCTACTTAGAGAGTGACCAGGCTGTTGGTAGTGATCCAGATAAAAACTTCTGGGTCAGGTACAGAATGGCTGTGGTGAATCAGAAGAATCCTGCAAAGACAGTGTGGAAGGAATCCTCTATCTGTACAAAGACATGGAATAATTCTGTTTTGCAATTCATGAAAGTGTCTGATATGTTGGAAGTAGATGCAGGGTTTCTTGTCCGTGATactgttgtttttgtttgtgaaataTTGGATTGCTGCCCTTGGTTTGAGTTTTCAGATTTAGAGGTTTTAGCTTCGGAGGATGACCAGGATGCTTTGACTACTGATCCTGATGAGCTCATTGATTCTGAAGACAGTGAAGGGATAAGTGGAGATGAAGAAGATATTTTCAGAAATCTTCTTTCCAGAGCTGGATTTCACCTAACATATGGGGATAATCCTTCGCAGCCACAAGTTACCTTAAGGGAAAAACTTCTAATGGATGCTGGAGCAATTGCTGGGTTTCTGACTGGACTCCGTGTTTATCTTGATGATCCTGCTAAAGTCAAGCGTTTACTTCTTCCAACCAAGCTCTCTGGCAGTTCTGATGGGAAGAAGGCCTCCAAGGTGGATGAGTCTTCCCCTAGCTTAATGAATTTGCTGATGGGAGTTAAGGTCTTGCAGCAGGCAATCATTGATTTACTTTTGGATATAATGGTGGAGTGCTGCCAACCTTCCGATGGGGGTTCTGTTACTGATTCTCTTGATGCATGCTCAAAACCTTCTCCAGATGGCAGTGGAGCTGCTAGTCCTCTGGAATGTGATAGAGAAAATGGAGCAACAGAATCTAAACAATTTCCCATTTATGAGAGATTGGATGCTGTTTCTGAAGAAAGTACCAGTACGTCTGCTGTACAGAGCTCAGATTTAAATGTTACTACTATCCAGGAAAAAGCTCTTCCTGGACAGCCTATTTGTCCACCAGAAACATCTGCTACTGGTTCGGAAAATGCATCCTTCCGTTCAAAGACCAAGTGGCCAGAACAATCTGAGGAGCTCTTAGGTTTAATTGTAAACTCATTAAGAGCCTTGGATGGTGTTGTTCCACAAGGCTGTCCTGAGCCAAGACGGCGGCCTCAGTCTGCACAGAAAATTGCTCTTGTATTGGACAAAGCTCCTAAGCATTTGCAAGCAGACCTAGTAGCTCTTGTACCCAAATTGGTTGAACATTCAGAACATCCACTCGCTGCCTATGCACTTCTTGAGCGGCTTCAAAAGCCAGATGCAGAACCTGCTTTGCGAATACCTGTATTTGGGGCACTTAGTCAACTGGAGTGCGGTAGTGAAGTGTGGGAACGTGTTCTATTCCAGTCATTTGATCTTTTGACAGACTCAAATGATGAACCCCTTGCAGTAActatagattttatatttaaagcaGCATCTCAATGTCAACATCTCCCTGAAGCAGTCAGATCTGTTCGTGCCAGGCTGAAAAATCTTGGTCTTGAGGTGTCACCTTGTGTCCTTGACTTCTtgagtaaaactataaatagtTGGGGGGATGTTGCTGAAACCATACTGAGGGACATTGATTGTGATGATGATTATGGTGACAATTGCTCAGCGCTGCCTTGTGGACTTTTCTTATTTGGTGAACATGGCAGCAATCCTTCTGGACTGCATGTGGTAGATGAGCAGGCCTTCCGGGCTAGTCGTCATTTTTCTGATATCTATATACTGTTTGAGATGCTATCTATTCCTTGTCTTGCCATTGAAGCTTCTCAGACATTTGAGAGAGCTGTAGCTCGAAATGCAATTGCTGGTCAATCTGTAGCATTGGTTTTGGAAAGGCGTCTTTCTCAAAGATTGAATAATAACGTGAGATATGttactgaaaattttcaacactCAGATGTTGTAGCTGAGGGAGATGCCAATGAACAATTAGGAGTTCCAAGGGATGATTTCACTTCAGTTCTTGGTCTTGCTGAGACATTGGCCCTCTCCAGAGAACCATGTGTGAAAGAATTTGTAAAGTTGCTCTACACAGTATTGTTTAGATGGTATGCCGATGAATCTTATCGAGTGAGAATCCTGAAGAGGCTTGTTGATCGTGCAACTAGCACCACTGACAATAGTCGTGAAGTAGATTTGGATTTAGATATCTTGGTTAATTTGGTCTGTGAGGAGCAGGAAATTGTTAGACCCATCTTAAGTATGATGCGTGAAGTTGCTGAACTTGCAAATGTTGATCGTGCTGCTCTGTGGCACCAGTTATGTGCTAGTGAAGATGAAATTATTCGGATTCgtgaagaaaggaaagctgaGATGTCTAATATGGCAAAGGAGAAAGCTATTATATCACAAAAGCTGAGTGAATCTGAAGCCATAAATAGTCGTCTCAAGTCTGAAATGAGGGCTGAGTTGGATCAGTTTGCTCGGGAAAGAAAGGAACTAGCTGAACAAGTACAAGAAGTAGAGAGTCAGCTTGAGTGGTATCGATCTGAGCGAGATGATGAAATAGCAAAACTCTCTGCAGAGAAAAAAGCTCTTCAGGACCGTCTGCATGATGCAGAGGCACAGCTTTCACAACTAAAGTCACGTAAACGTGATGAATTGAAGAAAGTAGTTAAGGAGAAAAATGCACTTGCTGAAAGATTGAAAAGTGCTGAAGCTGCAAGGAAGAGATTTGATGAAGAATTGAAGAGATATGCAACAGAGAATGTGACTCGGGAAGAAATCCGGCAATCACTTGAGGCTGAAGTTCGTAGACTGACACAAACAGTTGGACAAACCGAGGAAGAAAAACGAGAGAAGGAAGATCAGGTTGCTAGGTGTGAAGCGTATATTGATGGCATGGAATCAAAATTGCAGGCTTGCCAGCAATATATTCACACGCTTGAGGCTTCACTCCAGGAGGAAATGTCACGACATGCTCCTCTGTATGGTGCCGGTCTTGATGCTTTATCAATGAAAGAGTTGGAAACACTATCGCGTATACACGAAGAAGGGCTGAGGCAGATTCATGCCCTCCAACAGCTTAAAGGGAGTCCAGCTGGGAGTCCTCTTGTGAGTCCACATGCTCTCCCACACAATCATGGATTATATCCTGCTGCGTCGCCTCCGATGGCTGTGGGACTGCCTCCCTCACTTATCCCAAATGGGGTAGGAATTCACAGCAATGGCCATGTTAACGGTGCAGTTGGACCCTGGTTTAATCACGCTTG 5066 0.4281 MKQSSSEAVASLSSASTSTDQSHAATSSSSLASSEKPGTLVSSAAAAEDLAMGSRDGGGAQETVTVDRRGEYSAVCRWTVHNFPRIKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNMADDSKTIHRDSWHRFSSKKKSHGWCDFTPSSTVFDPKLGYLFNNDSVLITADILILNESVNFTRDNNELQSSASSIISSSVVAGPVSDVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGVEYLSMCLESKDTDKTVMLSDRSCWCLFRMSVLNQKPGSNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFIGPDSGFLVDDTAVFSTSFHVIKEFSNFSKNGGLIAGRSGSGARKSDGHMGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSDWSCFVSHRLSVVNQRMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILKESSIMQDFADHDAELSSSGSLVDRYAKRSSFTWKVENFLSFKEIMETRKIFSKFFHAGGCELRIGVYESFDTICIYLESDQAVGSDPDKNFWVRYRMAVVNQKNPAKTVWKESSICTKTWNNSVLQFMKVSDMLEVDAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSEDSEGISGDEEDIFRNLLSRAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSGSSDGKKASKVDESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSDGGSVTDSLDACSKPSPDGSGAASPLECDRENGATESKQFPIYERLDAVSEESTSTSAVQSSDLNVTTIQEKALPGQPICPPETSATGSENASFRSKTKWPEQSEELLGLIVNSLRALDGVVPQGCPEPRRRPQSAQKIALVLDKAPKHLQADLVALVPKLVEHSEHPLAAYALLERLQKPDAEPALRIPVFGALSQLECGSEVWERVLFQSFDLLTDSNDEPLAVTIDFIFKAASQCQHLPEAVRSVRARLKNLGLEVSPCVLDFLSKTINSWGDVAETILRDIDCDDDYGDNCSALPCGLFLFGEHGSNPSGLHVVDEQAFRASRHFSDIYILFEMLSIPCLAIEASQTFERAVARNAIAGQSVALVLERRLSQRLNNNVRYVTENFQHSDVVAEGDANEQLGVPRDDFTSVLGLAETLALSREPCVKEFVKLLYTVLFRWYADESYRVRILKRLVDRATSTTDNSREVDLDLDILVNLVCEEQEIVRPILSMMREVAELANVDRAALWHQLCASEDEIIRIREERKAEMSNMAKEKAIISQKLSESEAINSRLKSEMRAELDQFARERKELAEQVQEVESQLEWYRSERDDEIAKLSAEKKALQDRLHDAEAQLSQLKSRKRDELKKVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEIRQSLEAEVRRLTQTVGQTEEEKREKEDQVARCEAYIDGMESKLQACQQYIHTLEASLQEEMSRHAPLYGAGLDALSMKELETLSRIHEEGLRQIHALQQLKGSPAGSPLVSPHALPHNHGLYPAASPPMAVGLPPSLIPNGVGIHSNGHVNGAVGPWFNHA 1688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02380 1688 CDD MATH 77 203 IPR002083 GO:0005515
Bva06g02380 1688 SMART math_3 414 526 IPR002083 GO:0005515
Bva06g02380 1688 SMART math_3 246 359 IPR002083 GO:0005515
Bva06g02380 1688 SMART math_3 75 183 IPR002083 GO:0005515
Bva06g02380 1688 SMART math_3 582 682 IPR002083 GO:0005515
Bva06g02380 1688 ProSiteProfiles MATH/TRAF domain profile. 409 545 IPR002083 GO:0005515
Bva06g02380 1688 Coils Coil 1415 1520 - -
Bva06g02380 1688 CDD MATH 410 545 IPR002083 GO:0005515
Bva06g02380 1688 ProSiteProfiles MATH/TRAF domain profile. 241 378 IPR002083 GO:0005515
Bva06g02380 1688 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 568 703 IPR008974 GO:0005515
Bva06g02380 1688 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 59 210 IPR008974 GO:0005515
Bva06g02380 1688 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 400 554 IPR008974 GO:0005515
Bva06g02380 1688 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 237 385 IPR008974 GO:0005515
Bva06g02380 1688 ProSiteProfiles MATH/TRAF domain profile. 73 203 IPR002083 GO:0005515
Bva06g02380 1688 Gene3D - 1445 1637 - -
Bva06g02380 1688 SUPERFAMILY TRAF domain-like 578 702 - -
Bva06g02380 1688 SUPERFAMILY TRAF domain-like 239 385 - -
Bva06g02380 1688 MobiDBLite consensus disorder prediction 1 41 - -
Bva06g02380 1688 CDD Prefoldin 1417 1552 - -
Bva06g02380 1688 MobiDBLite consensus disorder prediction 1 40 - -
Bva06g02380 1688 Coils Coil 1528 1555 - -
Bva06g02380 1688 SUPERFAMILY TRAF domain-like 72 211 - -
Bva06g02380 1688 MobiDBLite consensus disorder prediction 932 957 - -
Bva06g02380 1688 PANTHER TRAF-LIKE FAMILY PROTEIN 30 1687 - -
Bva06g02380 1688 PANTHER TRAF-LIKE FAMILY PROTEIN 30 1687 - -
Bva06g02380 1688 SUPERFAMILY TRAF domain-like 410 550 - -
Bva06g02380 1688 CDD MATH 579 701 IPR002083 GO:0005515
Bva06g02380 1688 CDD MATH 242 374 IPR002083 GO:0005515
Bva06g02380 1688 MobiDBLite consensus disorder prediction 863 892 - -
Bva06g02380 1688 Pfam MATH domain 82 205 IPR002083 GO:0005515
Bva06g02380 1688 Pfam MATH domain 590 697 IPR002083 GO:0005515
Bva06g02380 1688 Pfam MATH domain 441 547 IPR002083 GO:0005515
Bva06g02380 1688 MobiDBLite consensus disorder prediction 940 956 - -
Bva06g02380 1688 ProSiteProfiles MATH/TRAF domain profile. 577 701 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02380 Bva-Chr6 15333394 15340607 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02380 - - ccaj:109798115 2981.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02380 06 15333394 15340607 Bva06g02380 06 15333394 15340607 ECH