Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02342 ATGGCAACCCGAAGAACTTCGAAGCTAACCCAATCCGCTTTAGCTGGCATTAGTGGGTGTAGGAGCTTTCACGAGTCCCTCTATCAACCTCGTTCCGCATTGTCTCGTGTCAGTTCAGTGTCCGGCACTTGTAATTGGAGAAATGCTAGAAACTTCGTGGTTCTGCCTCAAATTTTCAACACAGTTGCAGAGAGCAGCATCGCCTCCGCCAAGTTTCTCTCATACTCTTTCACTCGCAAATTCCATGCCTCCAATCCATCTTATCGCTCAGCTAGCAGTTCTCAGATTGCTCAGACAGAATTTACAGAACTGGCATGGGAGGGGATTATTGGTGCTGTTGATGCTGCACGAATTAGCAAACAACAAGTTGTGGAATCGGAGCACTTAATGAAAGCCCTCTTGGAGCAAAAGGATGGTCTGGCTCGAAGAATATTCACCAAGGCAGGATTGGATAACACAACTGTTCTGCAGGCTACTGATGAATTTATATCCCAGCAACCAACGGTGACTGGTGACACAAGTGGCCCTACCATAGGCACACATCTGAGTTCCCTCTTGGATAATGCCCGAAAgcacaagaaagaaatgggAGATGAATACGTGTCTGTGGAGCATTTTTTATTGGCGTTTCATTCTGACAAGAGATTTGGGCagcaattatttaagaaactTAAACTTGGCGAGAAGGATTTGAAGGATGCCATCAAAGCTGTTCGTGGAAGTCAAAGAGTAACTGATCAAAATCCTGAGGGAAAATATGAGGCGCTGGATAAGTATGGAAATGACCTGACTGAACTAGCAAGGCGTGGCAAACTTGATCCTGTCATAGGTCGAGATGATGAAATTCGGCGCTGTATCCAGATACTGTCGaggagaacaaaaaataatcccGTTATTATTGGTGAGCCTGGTGTGGGGAAAACTGCAATTGTTGAAGGATTAGCTCAACGGATAGTGCGAGGAGATGTTCCAGAACCTTTATTGAACAGGAAGTTGATCTCACTAGATATGGGTTCATTGGTTGCTGGTGCTAAGTTTCGTGGAGACTTTGAGGAAAGGTTGAAAGCCGTCCTGAAGGAAGTTACAGCTTCAAATGggcaaataattttatttattgatgagATTCATACTGTTGTAGGTGCAGGAGCCACAACTGGCGCAATGGATGCTGGGAACTTGTTGAAGCCAATGCTTGGAAGAGGTGAACTCCGATGTATAGGAGCAACTACATTGAATGAGTACAGAAAATACATTGAGAAGGATCCTGCACTTGAGCGCAGATTCCAACAGGTGTTTTGTGGCCAACCATCCGTTGAAGACACAATATCCATTCTTCGTGGGCTGCGTGAGCGTTATGAGTTGCATCATGGAGTCAAGATATCAGACAGTGCACTTGTTTCAGCTGCTGTTCTTGCAGATCGATACATTACAGAACGCTTCCTGCCTGACAAAGCTATTGATCTCGTCGATGAAGCTGCTGCAAAGCTGAAGATGGAGATTACTTCTAAGCCAACTGAATTGGATGAGATAGACAGGGCAGTGCTGAAGTTGGAGATGGAGAAACTATCTCTGAAAAATGACACCGATAAGGCATCCaaagaaagattaaataaGCTTGAAAGTGATTTAAGTTCACTTAAAcagaagcagaaagaattaaCAGAACAATGGGACCGTGAAAAGGTTCTAATGACTCGGATAAGATCAATCAAGGAAGAGATTGATAGAGTTAACCTGGAGATGGAAGCTGCTGAGCGTGAGTATGACCTGAACCGTGCTGCTGAGCTCAAGTATGGAACTCTAATTTCCCTTCAGCGCAAACTGGAAGAAGCGGAAAAGAACCTAGCTGACTTCCAAAAGTCTGGACAATCTTTGCTTCGAGAAGAGGTCACTGATCTTGATATTGCTGAGATTGTAAGCAAATGGACTGGTATACCATTATCAAACCTGCAACAAACGGAGAGAGAAAAGTTGGTGCTGCTGGAACAGGTTCTTCATAAAAGGGTAGTTGGTCAGGAAAATGCCGTAAAATCTGTGGCTGATGCAATCCGGCGTTCAAGGGCAGGATTGTCTGACCCGAATAGGCCAATAGCAAGCTTCATGTTCATGGGTCCAACTGGTGTTGGAAAAACTGAGCTTGCGAAGGCTTTGGCAGGGTACCTGTTTAACACAGAAAATGCTCTTGTTAGAATCGATATGAGTGAGTACATGGAGAAACATGCAGTCTCACGATTGGTTGGGGCCCCACCTGGTTATGTTGGTTATGAAGAAGGGGGTCAGCTAACTGAAGTAGTCCGTAGAAGACCTTACTCTGTGGTACTTTTTGATGAAATAGAGAAGGCACATCATGATGTCTTCAACATCTTGTTACAGTTGTTGGATGATGGAAGGATTACTGACTCTCAAGGAAGAACCGTTAGCTTCACAAATTGTGTTGTCATAATGACTTCAAACATTGGGTCCCATTACATACTAGAAACTCTACGTAATACACATGATGACAGAGATGCAGTTTATAATCAGATGAAAAGGCAAGTTGTTGAGTTGGCTAGGCAAACATTTCGGCCCGAGTTCATGAACCGAATTGATGAATATATTGTTTTCCAGCCTTTGGATTCCAAAGAGATCAGCAAAATTGTGGAGCTCCAGATGGAACGGGTGAAGGCCAGGCTGAAGCAGAAGAAAGTTGATCTTCATTACACAAAAGAAGCTGTTGAAGTTCTCGGTATTTTGGGCTTTGATCCAAATTTTGGGGCAAGGCCGGTTAAAAGAGTAATACAACAATTGGTTGAGAATGAAATTGCCATGGGAATCCTAAGGGGAGATTTCAAAGAAGAAGATTCAATTGTTGTGGATGCCGATCTTACTGGGTCCCAAAATAGACTTGTAATAAAGAAGTTGGAGAGCCCTGCTGCGGATGCCATGGTTGCAAATGACTA 2939 0.4253 MATRRTSKLTQSALAGISGCRSFHESLYQPRSALSRVSSVSGTCNWRNARNFVVLPQIFNTVAESSIASAKFLSYSFTRKFHASNPSYRSASSSQIAQTEFTELAWEGIIGAVDAARISKQQVVESEHLMKALLEQKDGLARRIFTKAGLDNTTVLQATDEFISQQPTVTGDTSGPTIGTHLSSLLDNARKHKKEMGDEYVSVEHFLLAFHSDKRFGQQLFKKLKLGEKDLKDAIKAVRGSQRVTDQNPEGKYEALDKYGNDLTELARRGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIVEGLAQRIVRGDVPEPLLNRKLISLDMGSLVAGAKFRGDFEERLKAVLKEVTASNGQIILFIDEIHTVVGAGATTGAMDAGNLLKPMLGRGELRCIGATTLNEYRKYIEKDPALERRFQQVFCGQPSVEDTISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKMEITSKPTELDEIDRAVLKLEMEKLSLKNDTDKASKERLNKLESDLSSLKQKQKELTEQWDREKVLMTRIRSIKEEIDRVNLEMEAAEREYDLNRAAELKYGTLISLQRKLEEAEKNLADFQKSGQSLLREEVTDLDIAEIVSKWTGIPLSNLQQTEREKLVLLEQVLHKRVVGQENAVKSVADAIRRSRAGLSDPNRPIASFMFMGPTGVGKTELAKALAGYLFNTENALVRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHHDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLRNTHDDRDAVYNQMKRQVVELARQTFRPEFMNRIDEYIVFQPLDSKEISKIVELQMERVKARLKQKKVDLHYTKEAVEVLGILGFDPNFGARPVKRVIQQLVENEIAMGILRGDFKEEDSIVVDADLTGSQNRLVIKKLESPAADAMVAND 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02342 979 PANTHER BNAC09G42450D PROTEIN 74 974 - -
Bva06g02342 979 PANTHER ATP-DEPENDENT CLP PROTEASE 74 974 - -
Bva06g02342 979 SUPERFAMILY Double Clp-N motif 100 251 IPR036628 -
Bva06g02342 979 CDD AAA 670 818 - -
Bva06g02342 979 Coils Coil 529 556 - -
Bva06g02342 979 Coils Coil 601 628 - -
Bva06g02342 979 CDD AAA 276 436 - -
Bva06g02342 979 ProSitePatterns Chaperonins clpA/B signature 1. 389 401 IPR018368 GO:0005524
Bva06g02342 979 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 254 644 IPR027417 -
Bva06g02342 979 ProSitePatterns Chaperonins clpA/B signature 2. 730 748 IPR028299 -
Bva06g02342 979 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 807 821 IPR001270 GO:0005524
Bva06g02342 979 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 745 763 IPR001270 GO:0005524
Bva06g02342 979 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 700 718 IPR001270 GO:0005524
Bva06g02342 979 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 774 792 IPR001270 GO:0005524
Bva06g02342 979 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Bva06g02342 979 ProSiteProfiles Clp repeat (R) domain profile. 96 241 IPR004176 -
Bva06g02342 979 Gene3D - 871 976 - -
Bva06g02342 979 Gene3D - 244 437 IPR027417 -
Bva06g02342 979 Gene3D - 438 643 IPR027417 -
Bva06g02342 979 SMART AAA_5 696 843 IPR003593 -
Bva06g02342 979 SMART AAA_5 293 437 IPR003593 -
Bva06g02342 979 Coils Coil 567 594 - -
Bva06g02342 979 Pfam AAA lid domain 437 539 IPR041546 -
Bva06g02342 979 Pfam AAA domain (Cdc48 subfamily) 695 864 IPR003959 GO:0005524|GO:0016887
Bva06g02342 979 Gene3D - 98 243 IPR036628 -
Bva06g02342 979 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 645 951 IPR027417 -
Bva06g02342 979 TIGRFAM chaperone_ClpB: ATP-dependent chaperone protein ClpB 101 954 IPR017730 GO:0005737|GO:0009408|GO:0042026
Bva06g02342 979 Pfam ATPase family associated with various cellular activities (AAA) 299 431 IPR003959 GO:0005524|GO:0016887
Bva06g02342 979 Gene3D - 648 869 IPR027417 -
Bva06g02342 979 SMART ClpB_D2_small_2 871 964 IPR019489 -
Bva06g02342 979 Pfam C-terminal, D2-small domain, of ClpB protein 871 951 IPR019489 -
Bva06g02342 979 Coils Coil 507 527 - -
Bva06g02342 979 Pfam Clp amino terminal domain, pathogenicity island component 112 163 IPR004176 -
Bva06g02342 979 Pfam Clp amino terminal domain, pathogenicity island component 189 240 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02342 Bva-Chr6 15138462 15144605 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02342 K03695 - gmx:100782242 1629.38