Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02330 atgggGAAAATGGTTGAAGACATTGGTACCAGTAAGGGTGGCAAGTATTCAAACGGGTTCGACTTGGATTTGGAAGGCGACGACGACGACGACTTGACTAGTATACAAGCCTTGGGGGAGAAGAGGCTTAGAAATTTCTGTAGCAAAGCCTCCACGTTGTTCTTCGAAGAGTATGGGCTCATCAGTCACCAAATTAACTCGTACAATGATTTTATCCAGAATGGTCTGCAAAGTGTATTTGATTCATTTGGTGAGTTGATTGTTGAGCCCGGATATGATCCCTCAAAGAAGGGAGAGGCCGGATGGAAATATGCTTCGGTGAGGTTTGGGAAGGTCACCCTTGATCGACCCAAATTTTGGAGTGGTGAAGGAAATGTAACTGAGTTGAAAATGCTTCCCAGGCATGCCCGACTCCAGAAGATGACATATGCATCCAAGATGAAAGTGAATGTTCATGTTCAGGTATATACCCAAGGATTGGTTAGTAGCGACAAGTTTAAAACTGGGAAAGAACAATTTGTTCAGAAGGATATTATCAAGGAAGATAGTAGAGAAATCATCATAGGAAGAATCCCTGTCATGGTGAAGTCAGATCTATGTTGGATGAAAGAAGCTGAAAAAGATGATTGTGATTTTGATCATGGAGGTTACTTTCTGATCAAGGGTGCAGAGAAGACTTTTATTGCACAAGAACAAATCAATTTGAAGAGGCTTTGGAtttcaaatattcaattttttacagTTGCATACAAGTCACAGGTGAAGAGAAATAGATTAGTTGTCAAGCTGGTAGAGAATCCCAGAAGTGGAGATATTAAAGGTGGAGAGAAGGTCCTTATGGTATACTTTTTGTCAGTTGAGATTCCTGTATGGATACTTTTTTTTGCTCTTGGTGTCTCATCTGACAGAGAAGTTATAGATCTTATTGATTATCGCGATGATGATATCAAAGCTTCAAATGTACTCTTTGCATCCATTTGTGATGCTGATGCTGATGCTGATGAGAGATTTCAATATTTCCGTAAAGGAAAGGAAGCACTTAATTACATAGATACAGAGATAAAAAGAACCAGCTTTCCACCTCCAGAATCTGGTGAAGACTGCCTTAACATGTATCTCTTTCCCAGCATTAGAGGCTTGAAGAGAAAGGCACGCTTCCTTGCATATATGGTGAAGTGTCTCTTATTGGCCTATACTGGCCGCAGAAGGTGTGATAACAGGGATGATTTTAGAAACAAGAGGCTTGACTTGGCTGGTGAGTTGCTTGAACGGGAGCTCAGAGTACATATTGCACATGCTCGGAAGCGTATGGCAAAAGCTATCCAGAGAGATCTTTATGGCGATCGTGATGTTCGTCCAATTGAGCACTATCTTGATGCTTCCATTATTACTAATGGTCTTCAAAGAGCATTCTCAACTGGAGCATGGACACACCCTTTTAAAAAGATGGAAAGGATCTCTGGTGTGGTAGGAAATCTTGGTAGAACAAATCCCTTACAAACTATGGTTGATTTGAGAAGAACTCGCCAGCAGGTTCAGTACACAGGAAGGGTTGGAGATGCCAGATTCCCGCATCCTTCTCATTGGGGTAAGGTGTGTTTTCTCTCTACGCCAGATGGTGAAAATTGTGGACTCGTAAAAAATTTGGCTGTCACAGGACTTGTAAGTACAACAACATATGAACCCATAGTTCCTCAGTTGTTTGATTGTGGAATGGAAGAGTTGGTGGATGACACTTCAACTAATCTGGGTGGAAAGGACAAAGTCTTCCTAAATGGCGATTGGGTTGGAGTCTGTGCAAATCCCTCTTTATTTGTGGCAGAGCTAAGAAATAAACGTCGTAGAAATGAATTGCCTTATCAGGTGGAAATCAAAGGAGATGAAAAGCAACATGAAGTGTGCATATACTCTGATGCTGGAAGAATTCTGCGCCCTCTTCTAGTAGTCaaaaatctaagaaaaattgaatataaatggGAAAGTTACTCCTTTAAGTCACTTCTGGAACATGGAGTTATTGAGCTTATTGGacctgaagaagaagaagactgCTGTACTGCATGGGgttttgcatatttatttgGGAAAGAGGTAGAGGGTAAACCTCGTGTAAAGTACACACATTGTGAACTTGATATGTCATTTCTACTGGGTTTAAGCTGTGCAATTATACCATTTGCTAATCATGACCATGCTAGGAGGGTTCTGTACCAGTCACAGAAGCACTCTTCGCAGGCTATTGGTTTCCCTACAACCAATCCAAACATTAGAGTTGATACTTTGTCCCATCAGTTACACTATCCTCAAAAGCCCCTCTTCTGTACCGTGACTTCTGATTGTCTTGGGAAACCACTAGGTCACAATAAAATGCTTCCAAAGCCTGAATTCTTTAATGGTCAGAATGCAATTGTTGCTGTAAATGTACATTTGGGATACAACCAAGAAGATTCCTTGGTGATGAACCGAGCTTCTTTGCAGCGTGGTATGTTTAGATCTGAGCATGTGAGAAGTTACAAAGCTGAAATTGACAATAAGGAATCATCAGAGAAGAGGAGGAAGCCTGATGACGTCATAAATTTCGGAAAGATACAAAGTAAAATCGGTCGAGTTGACAGCCTAGATGATGATGGCTTCCCATATGTTGGTGCAAACTTGCAGAGTGGTGATATTATTATTGGGCGGTGTTCTGATTCGGGTGTTGATCATAGTGTAAAGCTAAAACACACTGAAAAGGGCTATGTTCAGAAAGTTGTACTGTCATCAAATGATGAGGGGAAGAATTTTGCTGTGGTTTCTTTAAGACAGGTACGGAGTCCAGTCCTTGGAGACAAATTCTCTAGCATGCATGGACAGAAGGGTGTCTTGGGATTTCTTGAGGCTCAGGAGAACTTCCCCTTTACTCAACAAGGAATAGTGCCTGATATTGTGATAAATCCACATGCATTTCCCTCACGACAAACTCCTGGGCAACTCCTAGAAGCAGCCTTAGGGAAGGGGATTGCTCTTGGTGGTGGATTGAGGCATGCCACCCCTTTCTCCACTCCTTCTGTCGAAGCCATCACAGAACAGCTCCACAGAGCTGGTTTTTCGAAATGGGGAAATGAAAGAGTATACAGCGGGAGAACTGGTGAGATGGTCCGTTCGCTTATTTTCATGGGCCCAACATTCTACCAGCGTCTACACCACATGTCTGAGGACAAAGTGAAGTTTCGGAACACTGGTCCTGTTCATCCGTTAACCCGACAACCTGTGGCAGATAGGAAGCGTTTCGGTGGGATCAAGTTTGGGGAAATGGAGCGTGACTGCCTCATAGCCCATGGCGCATCAGCAAATCTGCACGAACGCCTCTTTACGCTCAGTGACTCCTCCCAGATACACATATGCCGCGGCTGCAAGAATGTTGCAAATGTCATCTTGCGCCCGGTGTCAGGTGGCCAGAGGATAAGGGGCCCTTATTGCCGATTCTGTGAATCGGCCGAACATATCGTTAAGGTCAATGTACCTTACGGAGCTAAATTGCTTTGTCAAGAGCTTTTTAGTATGGgcataaatctcaaatttgaAACCGAGCTGTGCTA 3578 0.4189 MGKMVEDIGTSKGGKYSNGFDLDLEGDDDDDLTSIQALGEKRLRNFCSKASTLFFEEYGLISHQINSYNDFIQNGLQSVFDSFGELIVEPGYDPSKKGEAGWKYASVRFGKVTLDRPKFWSGEGNVTELKMLPRHARLQKMTYASKMKVNVHVQVYTQGLVSSDKFKTGKEQFVQKDIIKEDSREIIIGRIPVMVKSDLCWMKEAEKDDCDFDHGGYFLIKGAEKTFIAQEQINLKRLWISNIQFFTVAYKSQVKRNRLVVKLVENPRSGDIKGGEKVLMVYFLSVEIPVWILFFALGVSSDREVIDLIDYRDDDIKASNVLFASICDADADADERFQYFRKGKEALNYIDTEIKRTSFPPPESGEDCLNMYLFPSIRGLKRKARFLAYMVKCLLLAYTGRRRCDNRDDFRNKRLDLAGELLERELRVHIAHARKRMAKAIQRDLYGDRDVRPIEHYLDASIITNGLQRAFSTGAWTHPFKKMERISGVVGNLGRTNPLQTMVDLRRTRQQVQYTGRVGDARFPHPSHWGKVCFLSTPDGENCGLVKNLAVTGLVSTTTYEPIVPQLFDCGMEELVDDTSTNLGGKDKVFLNGDWVGVCANPSLFVAELRNKRRRNELPYQVEIKGDEKQHEVCIYSDAGRILRPLLVVKNLRKIEYKWESYSFKSLLEHGVIELIGPEEEEDCCTAWGFAYLFGKEVEGKPRVKYTHCELDMSFLLGLSCAIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPNIRVDTLSHQLHYPQKPLFCTVTSDCLGKPLGHNKMLPKPEFFNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHVRSYKAEIDNKESSEKRRKPDDVINFGKIQSKIGRVDSLDDDGFPYVGANLQSGDIIIGRCSDSGVDHSVKLKHTEKGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLEAQENFPFTQQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGGLRHATPFSTPSVEAITEQLHRAGFSKWGNERVYSGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQIHICRGCKNVANVILRPVSGGQRIRGPYCRFCESAEHIVKVNVPYGAKLLCQELFSMGINLKFETELC 1192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02330 1192 Gene3D - 722 1075 IPR037033 GO:0003677|GO:0003899|GO:0006351
Bva06g02330 1192 Pfam RNA polymerase Rpb2, domain 5 664 712 IPR007647 GO:0006351
Bva06g02330 1192 Gene3D - 752 938 IPR014724 GO:0003899
Bva06g02330 1192 Gene3D RNA polymerase Rpb2, domain 2 237 404 IPR037034 GO:0003677|GO:0003899|GO:0006351
Bva06g02330 1192 Pfam RNA polymerase beta subunit 59 453 IPR007644 GO:0003677|GO:0003899|GO:0006351
Bva06g02330 1192 Pfam RNA polymerase Rpb2, domain 2 276 416 IPR007642 GO:0003677|GO:0003899|GO:0006351
Bva06g02330 1192 Gene3D - 53 236 - -
Bva06g02330 1192 Gene3D - 405 586 - -
Bva06g02330 1192 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 30 1189 IPR015712 GO:0003899|GO:0006351|GO:0032549
Bva06g02330 1192 Pfam RNA polymerase Rpb2, domain 4 589 650 IPR007646 GO:0003677|GO:0003899|GO:0006351
Bva06g02330 1192 ProSitePatterns RNA polymerases beta chain signature. 942 954 IPR007121 GO:0003677|GO:0003899|GO:0006351
Bva06g02330 1192 PANTHER DNA-DIRECTED RNA POLYMERASE D SUBUNIT 2B-RELATED 30 1189 - -
Bva06g02330 1192 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 44 1190 - -
Bva06g02330 1192 Pfam RNA polymerase Rpb2, domain 6 722 1089 IPR007120 GO:0003677|GO:0003899|GO:0006351
Bva06g02330 1192 CDD RNA_pol_B_RPB2 60 1188 IPR015712 GO:0003899|GO:0006351|GO:0032549
Bva06g02330 1192 Pfam RNA polymerase Rpb2, domain 3 493 552 IPR007645 GO:0003677|GO:0003899|GO:0006351
Bva06g02330 1192 Pfam RNA polymerase Rpb2, domain 7 1091 1189 IPR007641 GO:0003677|GO:0003899|GO:0006351
Bva06g02330 1192 Gene3D RNA polymerase alpha subunit dimerisation domain 1076 1190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02330 Bva-Chr6 15049938 15056914 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02330 - K16252 qlo:115974848 1875.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02330 06 15049938 15056914 Bva06g02330 06 15049938 15056914 ECH