Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02306 ATGCTTGTCTCTGGAGTATCGTTGGATCTGAATTGGTTCCTGCAATTGATTTTCTCGCTATTTATAGTTGCTGTTGGATTGCTCTACATGGTTAAGAACACGGCCTCGAAATACTTTGAGGTCGACGCTAATTTCGAAGGGGAGCAGCCCAACGATCGAACTCCAATGCCTGGTGTTCTCATGGACGATTCTGTTTGTGCCGTCTGCGGCAGTTTCGGCACTAAGAAATGCTCACGCTGCAAAGCCGTACGATACTGCTCACAAAAATGCCAACAGTCTCATTGGAACTCTGGGCATAAGACAAAATGCAAGGATGTGGCTAATGGTGGGTTTAAAGCTTCTGCTGGGGGTAAAAACTTATCTGCCATTGCCCTGGTACCTGCTTGCGGAACTTACAGGCCTATAGAGCAACctgaaaatgGTCTTTTTCCTTATGAcgaatttgttaaatttttcaattggGACAAAACAGGATTTCCTCCGTGTGGACTCCTGAATTGTGGAAACAGCTGCTTTGCGAATGTGGTTCTTCAATGTCTCTCGTTCACAAGGCCACTCGTTACCTATTTGTTGGAGAAAGGCCATCGCAGACAATGCAGGCGTAATGACTGGTGCTTTCTTTGTGAATTTCAAACCCACGTCGAAAGAACAAGTCAGAGTTCACAGGCCTTTTCTCCTATGAATATTCTTTCTCGTTTACCTAATATTGGTGGCACTTTGGGGTATGGAAGACAAGAGGATGCTCACGAGTTCATGAGGTTTGCCATTGACACAATGCAATCTGTTTGCCTCGATGAATTTGGTGGAGAAAAAGCTGTCTCTCCTAACCTACAAGAGACAACTCTTATTCAGCACATTTTTGGTGGTCACCTTCAATCTCAGgtGTTTTGTACAAAATGTGAGAAGATTTCAAATCAGTATGAAAATATGATGGATTTAACGGTTGAAATTCAAGGAGATGCTGCTTCCTTAGAGGAATGTCTAGAGCAGTTCACTGTCAAGGAGTGGCTTCAAGGGGAAAACATGTATAAATGTGACGGGTGCAATGACTATGTCAAGGCATGGAAGCGTCTTACAGTTAAACGAGCTCCAAATATCCTCACAATTGCCTTGAAGAGATTTCAGAGTGGGAGAtttggaaaattaaacaagagagTAACTTTTCCTGAGACGTTAGATCTCAGCCCTTACATGAGTGAAGCAGGAGATAGATCAGATATTTACAAGCTTTATGCGGTTATAGTCCATGTAGATATGCTGAATGCTTCATTTTTTGGTCATTATGTCTGCTATATCAAAGATTTCCAGGGAAACTGGTATAGGATTGATGATTGGAAGGTCATGAATGTGGAATTGGAAGAGGTACTTTCTCAGGGAGCTTACATGCTTTTGTACACCAGGGCTAGTGCCCGGCCATCAGGCCTTCATACCACTGAATCTCCGGAAAATGCAGAAGAGCAAACAGTGGTGAATGTGATTGTGGAGCCTGGCGCAATCCAACAAGCTGAATGTCTCTCAAGTAGGGGGAGTGTGGCTTCCAATAGAAGTTCTGAGGTTTTGCCATCTAATAATAGTCTGGAACCGAATGTTTCTGGCTGTAAAAATGAGTCGTTGACCAGAATGAATTCTGATGTCAAAAGGGAGCATTCTGAGGATTCAGAAATGATTGATGTGGAGTCAACTTCTGATTTTGCAAATAAGATTCCACGCAGTGCTGTTGAAGAGACTTCAGGCCGCATGGAAGAGCATGATGATGTCAATATGGCTGAATCTGGTCCTTCTCCAGGTTTGCCAATTGATAAAGATTATGTTTCAATGGACTTCCAAAGCGCAAGAGAAGATTCAGAACAAACAGATACGGTTAAACTCAAATCAAAAACAGCAAAGGTTAATGGCATTGGCAATGGGTATGTTAGGGCAAATAAATCTGCTATTCCACTTGAAGATGCTCGTACAGTATATTCTGGCATTAATTCTTTTCCCACTGAAACATCCCCAGCTGAGGTGCATCCTTTAAAGGGGGGTTGCCACTCTACAAATCGGAAACTGATGAAGGAAATGGAATCAAGAGAGTA 2075 0.4188 MLVSGVSLDLNWFLQLIFSLFIVAVGLLYMVKNTASKYFEVDANFEGEQPNDRTPMPGVLMDDSVCAVCGSFGTKKCSRCKAVRYCSQKCQQSHWNSGHKTKCKDVANGGFKASAGGKNLSAIALVPACGTYRPIEQPENGLFPYDEFVKFFNWDKTGFPPCGLLNCGNSCFANVVLQCLSFTRPLVTYLLEKGHRRQCRRNDWCFLCEFQTHVERTSQSSQAFSPMNILSRLPNIGGTLGYGRQEDAHEFMRFAIDTMQSVCLDEFGGEKAVSPNLQETTLIQHIFGGHLQSQVFCTKCEKISNQYENMMDLTVEIQGDAASLEECLEQFTVKEWLQGENMYKCDGCNDYVKAWKRLTVKRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSEAGDRSDIYKLYAVIVHVDMLNASFFGHYVCYIKDFQGNWYRIDDWKVMNVELEEVLSQGAYMLLYTRASARPSGLHTTESPENAEEQTVVNVIVEPGAIQQAECLSSRGSVASNRSSEVLPSNNSLEPNVSGCKNESLTRMNSDVKREHSEDSEMIDVESTSDFANKIPRSAVEETSGRMEEHDDVNMAESGPSPGLPIDKDYVSMDFQSAREDSEQTDTVKLKSKTAKVNGIGNGYVRANKSAIPLEDARTVYSGINSFPTETSPAEVHPLKGGCHSTNRKLMKEMESRE 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02306 691 ProSitePatterns Zinc finger MYND-type signature. 66 103 IPR002893 -
Bva06g02306 691 Gene3D - 60 108 - -
Bva06g02306 691 Pfam MYND finger 66 103 IPR002893 -
Bva06g02306 691 MobiDBLite consensus disorder prediction 575 598 - -
Bva06g02306 691 SUPERFAMILY HIT/MYND zinc finger-like 63 106 - -
Bva06g02306 691 SUPERFAMILY Cysteine proteinases 158 472 IPR038765 -
Bva06g02306 691 Gene3D Cysteine proteinases 156 476 - -
Bva06g02306 691 ProSiteProfiles Zinc finger MYND-type profile. 66 103 IPR002893 -
Bva06g02306 691 MobiDBLite consensus disorder prediction 514 536 - -
Bva06g02306 691 MobiDBLite consensus disorder prediction 665 691 - -
Bva06g02306 691 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 19 617 - -
Bva06g02306 691 CDD Peptidase_C19E 161 465 - -
Bva06g02306 691 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 163 178 IPR018200 GO:0004843|GO:0006511
Bva06g02306 691 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 617 - -
Bva06g02306 691 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 162 468 IPR028889 -
Bva06g02306 691 Pfam Ubiquitin carboxyl-terminal hydrolase 162 465 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02306 Bva-Chr6 14947940 14953092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02306 5 507 Miscellaneous Gene Families AT4G31670 63.654 0.0 670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02306 K11855 - gmx:100820594 908.286