Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02254 ATGGGAGATCCGTATTACAGATATGGTACTCCCACTGACAGAGCAAGCATTCCGAGAACTAGCTTTGCTGGGTATCTGCCATCTGAAACACCATCTGCGGCATCTCATCATGCTTCGATTTCAACTGAATTTCGGGGTTTTGGGTCTGATTACTTGCAGAATGATATAAACTTACTGCGGACTGGGGGATATGGTGAAGATATTATGGCCACAAGAGTTAATTCTGAACCTGTTATTAGTAGTGGTACAACAGGGGCCAACGTAAAGGGCTATGCATCTGTTGAAGCTCCAGAACTGATAAGTCAAAAACTGGATAGTGAAAGACCTATCTCTAAAAGCAATTATGACAGTGTCCTATTTTCAGCTGCAGAATCAAACATTCTGTTTGTGGGAGGACTTCCGAATGACTGTTGTAGAAGGGAAGTTGGTCATCTTTTTCGTCCCTTTATTGGCTATAAGGATATCAAAGTTGTTCACAAAGAGCCTAGACGGAGTGGAGACAAGGCTACAGTTTTATGCTTTGTTGAGTTTGTTGACGGCAAATGTGCTCTTACCGCCATGGAAGCTCTGCAAGGCTACAagtttgatgataaaaaaCCTAATTCACCGACcttgaaaattcaatttgcTCACTTTCCTTTCCATCCACCTCCTGATCATGGGGAGCAGCTTACAAATACGCAACGGTG 689 0.4165 MGDPYYRYGTPTDRASIPRTSFAGYLPSETPSAASHHASISTEFRGFGSDYLQNDINLLRTGGYGEDIMATRVNSEPVISSGTTGANVKGYASVEAPELISQKLDSERPISKSNYDSVLFSAAESNILFVGGLPNDCCRREVGHLFRPFIGYKDIKVVHKEPRRSGDKATVLCFVEFVDGKCALTAMEALQGYKFDDKKPNSPTLKIQFAHFPFHPPPDHGEQLTNTQR 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02254 229 Gene3D - 121 212 IPR012677 -
Bva06g02254 229 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 15 218 - -
Bva06g02254 229 PANTHER PROTEIN COUCH POTATO 15 218 - -
Bva06g02254 229 SMART rrm1_1 127 208 IPR000504 GO:0003723
Bva06g02254 229 CDD RRM_RBPMS_like 126 208 - -
Bva06g02254 229 SUPERFAMILY RNA-binding domain, RBD 112 212 IPR035979 GO:0003676
Bva06g02254 229 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 126 212 IPR000504 GO:0003723
Bva06g02254 229 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 128 199 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02254 Bva-Chr6 14706242 14709183 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02254 - - lang:109343815 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02254 06 14706242 14709183 Bva06g02254 06 14706242 14709183 ECH