Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02218 ATGCAAGCTTGTAGCGGAGTCGCAATGATGGGCTCTTTGCAGCAACCCATTTGGACCAAGGGGCTGAATTCTGCTGCAAAAGGATGGGGCAATAATGGATTTGTACCTCAAGTGAAGCTCTACAGTGTGAAGCCGTGTAAGGCATCTTATGTTGAAGAAAGTTTGACCACTAAGAGGCCGTCAACTGTCTCTGTTCCTGTGACTGAAATTGGAGGTGCTGTAAGTAGCTTTGTAGACTATGGCTTGAGTGAAGCCGATCCTGAGGTGCGTGCAATTATAGACAAAGAAAAGGAACGACAATTCAAGAGCCTTGAGCTTATCGCTTCAGAAAATTTTACATCTAAAGCAGTGATGGAAGCAGTGGGTTCATGCCTCACAAATAAGTACTCTGAAGGGCTACCTGGGAAAagATACTACGGTGGCAATGAGATAATAGATGAGCTTGAAATACTATGCCAGCAAAGGGCATTGGCTGCATTTCACTTAGATAGAACGAAGTGGGGTGTAAATGTTCAACCATTATCTGGTTCTCCAGCTAATTTTGCAGTTTACACTGCAATTCTTAATCCTCATGATCGGATAATGGGTCTGGACTTGCCTCACGGGGGACATTTGTCTCACGGATTCATGACTCCTAAACGACGTGTATCAGCGacatcaatttattttgagtCTATGCCTTATCGACTTGATGAATCGACAGGTCTGATTGATTATGATATGCTTGAGAAAACAGCTAACCTCTTCCGGCCAAAACTTATAATTGCTGGTGCTAGTGCTTATCCTCGAGACATTGACTATCCTCGCATGAGGAAAATTGCAGATGAAGTGGGTGCTTTTCTTATGATGGATATGGCTCACATAAGTGGACTTGTTGCTGCTTCTGTGCTTGCTAATCCCTTTGAGTACTGTGATATTGTGACAACCACAACCCACAAGTCTTTGAGAGGTCCAAGAGGTGGCATGATATTCTTCAAGAAAGATCCTGTGCTTGGAGTTGATCTAGAATCTACCATTAACAATGCTGTTTTTCCAGGTCTACAGGGTGGTCCTCATAACCACACCATTGGAGGACTATCCACTTGCCTCAAGCTTGCCCAATCCCAAGAGTTTAAAGATTACCAAAACCAAGTGGTCTCTAACTGTAAAGCTCTTGCCGGTAGATTAATCGAACATGGATACAAATTGGTTTCTGGTGGAAGTGATAATCACCTGGTGCTTGTTGATCTGAGGCCATCTGGGATTGATGGTGCTCGTGTGGAGAAAATTCTTGACATGGCTTCCATAACACTCAATAAAAATTCAGTGCCTGGTGACAAGAGCGCCCTAGTGCCAGGAGGCATCCGCATTGGAACGCCTGCACTGACAACTAGAGGATTTAAAGAGGAAGAATTTGTATTAACTGCAGACTTGATTCACGAGGGTGTCAAAATAGCACTTGAAGCCAAAGGTCAAGCCCCAGGATCAAAACTCCAAGAGTTTCTGAAGTTTGTGTCATCTCCCGAATTTCCTTTGAGAGATCGGGTTTCTGACTTGCGCAAGAGAGTGGAAGGTTTTACTACTAAATTTCCAATTCCGGGATTCTA 1586 0.4344 MQACSGVAMMGSLQQPIWTKGLNSAAKGWGNNGFVPQVKLYSVKPCKASYVEESLTTKRPSTVSVPVTEIGGAVSSFVDYGLSEADPEVRAIIDKEKERQFKSLELIASENFTSKAVMEAVGSCLTNKYSEGLPGKRYYGGNEIIDELEILCQQRALAAFHLDRTKWGVNVQPLSGSPANFAVYTAILNPHDRIMGLDLPHGGHLSHGFMTPKRRVSATSIYFESMPYRLDESTGLIDYDMLEKTANLFRPKLIIAGASAYPRDIDYPRMRKIADEVGAFLMMDMAHISGLVAASVLANPFEYCDIVTTTTHKSLRGPRGGMIFFKKDPVLGVDLESTINNAVFPGLQGGPHNHTIGGLSTCLKLAQSQEFKDYQNQVVSNCKALAGRLIEHGYKLVSGGSDNHLVLVDLRPSGIDGARVEKILDMASITLNKNSVPGDKSALVPGGIRIGTPALTTRGFKEEEFVLTADLIHEGVKIALEAKGQAPGSKLQEFLKFVSSPEFPLRDRVSDLRKRVEGFTTKFPIPGF 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02218 528 SUPERFAMILY PLP-dependent transferases 79 527 IPR015424 -
Bva06g02218 528 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 305 321 IPR019798 GO:0030170
Bva06g02218 528 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 53 527 - -
Bva06g02218 528 Gene3D Aspartate Aminotransferase, domain 1 86 526 IPR015422 GO:0003824
Bva06g02218 528 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 53 527 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Bva06g02218 528 CDD SHMT 84 498 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Bva06g02218 528 PIRSF SHMT 69 528 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Bva06g02218 528 Pfam Serine hydroxymethyltransferase 82 471 IPR039429 -
Bva06g02218 528 Gene3D - 111 376 IPR015421 GO:0003824
Bva06g02218 528 Hamap Serine hydroxymethyltransferase [glyA]. 81 527 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02218 Bva-Chr6 14536232 14540141 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02218 K00600 - gmx:100305381 883.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02218 06 14536232 14540141 Bva06g02218 06 14536232 14540141 ECH