Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02132 ATGAATGACCGGCGACAATCGTCTTCTGCCAAACAGGGTTCTTCAACCTTCACCCCCGCGTCGCCGGGAACATGTCCCTCTGATTGTCGCTGCCGTCGCGATGTTTTGCCAGAAACACTCTTGCAAAACCCTTACCGGCAATTCAGTTCTGATCAAACCCTAGTCCAAGCTTTCTCTGGTCTCAGCATCTCATCTCAGCCTTTTGATTTCGCTGGCCATAATACTCGAGGCTCAACTCTTAATAGTGCCGCTAaagatttcatttttggtGGCCGTCAATTCTCTCAACCTTCCAAGGCTGGACAACCGCAACAAAGAAACAATGGGTTTCAAAGACCTGGTTGGGATGATGATGCCTCAATGCGATCACAAAATCACTGGTTTCAAACTGATATTTGGGGCTGTGAGGGCTTTGGGGCCGCTTCGTATCCCGCTACGGGTGTGAACGGATACACTTCCAACCATGACTGgtctttttatgattttactcGTTCCTtgagacaaaaagaaattggtaGGGCTTTCCCCACTTTCCCAATTCAAAATGGGGATGGATCATACGTCGATTTACAACAAATTTCCAGCGGCACCTTCAATGATTTATTGAGCTATAGAACCAATATTTCTGGGTTTAATGTCAATGCTATTGGTAGGCGTCCCCATTGGTCCCACCAACAAATGAATTACCTGTCCATTAGTGATTTGCGTGGAAAGATACTGTTGATAGCTAAGGATCAATACGGATGTAGGCAATTGCAGGAAGCCATGAAAGGCTTAAAACCCGATGATATTTCTACCATCTTCTTCGAGCTGATTGATCATGTGAGCGAGTTGATGCTGGATTCATTTGGAAACTATGTCGTTCAGAAACTGATTGAGGTTTGTACCGAAGAACAGAGGACTCAAATCATTTTAATGGTGACCAAGGATAATTTCCAGCTTGTTAATATATGCCTAGACATGCATGGAACCCGCGCTGTACAGAAATTATTGGAGCATGCCACCACCCGGAGGCAAAGATCTCTTATTATGTCAGCTATAGGCCCTGGTGCTGTTCCATTAACCAAGGACATGAACGGTCATCATGTCATTCTGCATTGCCTAAGGCATTTCTCAGATGAAGATAATGAGTATCTTCTGACAGAGGTGGCAAAAAACTGTTTTGGGATTGCAACAGATAAAAGTGGTTGTTGTGTGCTGCAGCATTGCGTCAACCATGCTCAAGGAGAAACCAAAGAGCGTCTGATGGCTCAGATAATAGGAAATGCTTCACTCTTAGCTGAAGACTGCTATGGcAATTATGTGGTGCAACATTTAGTGTCTCTGAAGATGCCAAGAGTTACAGAATGCCTTATGAGACAGCTTGAAGGGAGATTTGTGTCTCTTTCCTGCAATAAGTATGGAAGTAATGTTGTGGAAAAGTTATTTCAAGAGTCGGGAGCACATCATTCTACACGCATTATTTGGGAGCTTGTCCAGCATCCAAATGTTTCAATGCTTTTTGTGGATCCTTACGGGAATTATGTCATCCAATCGGCACTTACGGCGTCCAAGGGTCCTCTACGTAATACCCTCCAAAGGCTGATCCAAGATAACTCTGAAATGATGCGCAGCAACCTCTACGGGAAGAAGCTGCTTGTTAAGTTTGACAAGGAGAAGCTTAGGCATAATATATA 1676 0.4308 MNDRRQSSSAKQGSSTFTPASPGTCPSDCRCRRDVLPETLLQNPYRQFSSDQTLVQAFSGLSISSQPFDFAGHNTRGSTLNSAAKDFIFGGRQFSQPSKAGQPQQRNNGFQRPGWDDDASMRSQNHWFQTDIWGCEGFGAASYPATGVNGYTSNHDWSFYDFTRSLRQKEIGRAFPTFPIQNGDGSYVDLQQISSGTFNDLLSYRTNISGFNVNAIGRRPHWSHQQMNYLSISDLRGKILLIAKDQYGCRQLQEAMKGLKPDDISTIFFELIDHVSELMLDSFGNYVVQKLIEVCTEEQRTQIILMVTKDNFQLVNICLDMHGTRAVQKLLEHATTRRQRSLIMSAIGPGAVPLTKDMNGHHVILHCLRHFSDEDNEYLLTEVAKNCFGIATDKSGCCVLQHCVNHAQGETKERLMAQIIGNASLLAEDCYGNYVVQHLVSLKMPRVTECLMRQLEGRFVSLSCNKYGSNVVEKLFQESGAHHSTRIIWELVQHPNVSMLFVDPYGNYVIQSALTASKGPLRNTLQRLIQDNSEMMRSNLYGKKLLVKFDKEKLRHNI 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02132 558 ProSiteProfiles Pumilio RNA-binding repeat profile. 454 489 IPR001313 GO:0003723
Bva06g02132 558 ProSiteProfiles Pumilio RNA-binding repeat profile. 490 530 IPR001313 GO:0003723
Bva06g02132 558 CDD Pumilio 230 548 IPR033712 GO:0003723
Bva06g02132 558 Gene3D - 219 557 IPR011989 -
Bva06g02132 558 MobiDBLite consensus disorder prediction 1 28 - -
Bva06g02132 558 Pfam Pumilio-family RNA binding repeat 239 272 IPR001313 GO:0003723
Bva06g02132 558 Pfam Pumilio-family RNA binding repeat 386 420 IPR001313 GO:0003723
Bva06g02132 558 Pfam Pumilio-family RNA binding repeat 426 440 IPR001313 GO:0003723
Bva06g02132 558 Pfam Pumilio-family RNA binding repeat 274 304 IPR001313 GO:0003723
Bva06g02132 558 Pfam Pumilio-family RNA binding repeat 503 523 IPR001313 GO:0003723
Bva06g02132 558 Pfam Pumilio-family RNA binding repeat 352 383 IPR001313 GO:0003723
Bva06g02132 558 Pfam Pumilio-family RNA binding repeat 313 347 IPR001313 GO:0003723
Bva06g02132 558 Pfam Pumilio-family RNA binding repeat 458 491 IPR001313 GO:0003723
Bva06g02132 558 MobiDBLite consensus disorder prediction 1 23 - -
Bva06g02132 558 MobiDBLite consensus disorder prediction 95 111 - -
Bva06g02132 558 ProSiteProfiles Pumilio RNA-binding repeat profile. 418 453 IPR001313 GO:0003723
Bva06g02132 558 ProSiteProfiles Pumilio RNA-binding repeat profile. 234 269 IPR001313 GO:0003723
Bva06g02132 558 ProSiteProfiles Pumilio RNA-binding repeat profile. 306 345 IPR001313 GO:0003723
Bva06g02132 558 MobiDBLite consensus disorder prediction 93 116 - -
Bva06g02132 558 ProSiteProfiles Pumilio RNA-binding repeat profile. 382 417 IPR001313 GO:0003723
Bva06g02132 558 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 163 548 - -
Bva06g02132 558 SUPERFAMILY ARM repeat 225 546 IPR016024 -
Bva06g02132 558 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 213 553 IPR033133 GO:0003723
Bva06g02132 558 SMART pum_5 382 417 IPR001313 GO:0003723
Bva06g02132 558 SMART pum_5 270 305 IPR001313 GO:0003723
Bva06g02132 558 SMART pum_5 234 269 IPR001313 GO:0003723
Bva06g02132 558 SMART pum_5 418 453 IPR001313 GO:0003723
Bva06g02132 558 SMART pum_5 492 527 IPR001313 GO:0003723
Bva06g02132 558 SMART pum_5 454 489 IPR001313 GO:0003723
Bva06g02132 558 SMART pum_5 346 381 IPR001313 GO:0003723
Bva06g02132 558 SMART pum_5 309 345 IPR001313 GO:0003723
Bva06g02132 558 ProSiteProfiles Pumilio RNA-binding repeat profile. 270 305 IPR001313 GO:0003723
Bva06g02132 558 PANTHER PUMILIO HOMOLOG 15 163 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02132 Bva-Chr6 14079370 14082600 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02132 - - zju:107420526 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02132 06 14079370 14082600 Bva06g02132 06 14079370 14082600 ECH