Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02085 ATGAACCTGGCTTGTACACTTTGCAGCTCCAAAACGCCAAGTCTCTCCTTTTTTCACTCTCTACTTACATCATACACTGGGAGCCAAAATTCGAAACTGGCCCTGGATATCTTTAGGCAACTTTTGGAGACTAATGTCAATCCCGTTGATCTTACTTTCTCGCTACTCCTCAAAGCTTGTGCTTCATCTTTATCTTCCTATGCTTATGCTTCGTTTTCTGCCGGAATCGAAGGTAGCCAAGTTCATTCCCAGTTGGTGAAACGGGGTATTAACCAATTCGTGTATGTAAATACTGCTCTTCTTGATTTTTACATGAAATTGGGGTGTACAACTGATGCACGGAAGTTGTTTGAAAATATGCCTTGTAGAGATGTTGTGTCTTGGAACGCTTTGATTTGTGGGTATTCACAAAATGGGTATCATTTTGATGCGCTGGATCTCTTTGTACAGATGCTTAGAGACGGTTTTCGACCCAATCAGACTACAATTGTTAGTCTCGTACCTTCTTGTGGTCTCCGTGAGTTAATTCTTCAGGGAAGCTCCATTCATGGGTTGGGAATTAAAGCCGGCCTTGGTTGGGACCCTCAAGTGAAGAATGCTATTACCTCAATGTATGCTAAATGTGATGATTTAAAAGCATCCGAACTCTTATTTGAAGAAATGTCTGAGAAGAATATCGTTTCTTGGAATACCATGATTGGTGCCTATGGCCAAAATGGTTTCTCGGACAAGGCAatgtttttcttcaaaaaaatgcTAGAGGAAAGTTTACAACCCAGTCCAGTGACAATGATTAGTCTTCTGTCAGCGAATGCTGTTCCAGAAATTGTTCATTGTTATATTATCAAATGTGGTTTCAACAGTTATGTTTCTGTGATTACTTCACTAATTTGTCTATATGCAAAGAAAGGGTGCACAGATATGGCAGAGCTGCTTTACAAAACTTCGCCCGTGAAAAACCTGATCTCCCTAACTGCAATAATGTCAAGCTATTCTGAGAAAGGTGATATAAAGTTAGTAATTGAGTATTTTATGCAAATCCAGCAGCTAGACATGAAACCAGATGCAGTTGCCATGATTAGCGTCCTTTGTGGAATTATAGATCCTGCTCATTTTGTTATTGGACGTGCTTTCCATGGCTATGGATTACAAAGTGGGTTGATTGTCGACTGTCTAGTTGTAAATGGGCTCATAAGCATGTATTCTAGATTTGATGAAATCGAAGATgctttatctttgtttttggAGATGAATGAAAAACCGCTGATCACTTGGAATTCTTTGATATCTGGATTTGTGCAGGCTGGAAAACCAAGTCATGCCATGGAATTGTTCCGTCGGATGAAGATGTATGGACAAAAACCAGATGGCATTACCATTGCTAGTTTACTGTCTGGATGTTGCCAGCTTGGGTACCTGCGGATTGGGGAGGTACTTCATAACTATGTCGTAAGGAACAATGTTAAAGTGGAAGATTTCACAGGAACTGCTCTAATAGACATGTATACAAAGTGTGGAAGATTAGAGTATGCTGAAAGAGTATTCAAGAGCATCAATGATCCATGTTTAGCAACGTGGAACTCTATCATATCAGGTTATAGTTTACACGGGATTGAACATCAAGCTTTCATTTGTTACTCAGAACTACTAGAACATGGGCTAAAACCTGACAGAATCACCTTCTTAGGAGTTTTATCAGCATGCACTCATGGTGGACTTGTCCTTGAAGGAACAGAGCACTTTCTTATCATGACCAAAGAGTATGATTTGATGCCAGATTTGCAACATTGTGCAAGCATGGTTGGACTCTTAGGTCGGGCAGGCTTGTTTAAGGAAGCACTGGAATTTATTAATAACATGGAGATTGAGCCTGATTCTGCTGTCTGGGGAGCTTTGTTGAGTGCTTGTTGCATACACCAACAGGTCAAGCTTGGGGAATGCTTGGCCAAAAAATTGTTCTTCTTGAATAACAAAAATGGTGGGTTCTATGTATTAATGTCAAATCTGTATGCGATTGTAGGGAGGTGGGACGATGTAGCAAGGGTGAGGTATATGATGATAGAAAGTGGAGGAGATGGTTGTTCAGGAGTTAGTGTTATTCAAGTGGCATCTGTTGAagacattaataataatgtactTCTGGATGAATG 2150 0.394 MNLACTLCSSKTPSLSFFHSLLTSYTGSQNSKLALDIFRQLLETNVNPVDLTFSLLLKACASSLSSYAYASFSAGIEGSQVHSQLVKRGINQFVYVNTALLDFYMKLGCTTDARKLFENMPCRDVVSWNALICGYSQNGYHFDALDLFVQMLRDGFRPNQTTIVSLVPSCGLRELILQGSSIHGLGIKAGLGWDPQVKNAITSMYAKCDDLKASELLFEEMSEKNIVSWNTMIGAYGQNGFSDKAMFFFKKMLEESLQPSPVTMISLLSANAVPEIVHCYIIKCGFNSYVSVITSLICLYAKKGCTDMAELLYKTSPVKNLISLTAIMSSYSEKGDIKLVIEYFMQIQQLDMKPDAVAMISVLCGIIDPAHFVIGRAFHGYGLQSGLIVDCLVVNGLISMYSRFDEIEDALSLFLEMNEKPLITWNSLISGFVQAGKPSHAMELFRRMKMYGQKPDGITIASLLSGCCQLGYLRIGEVLHNYVVRNNVKVEDFTGTALIDMYTKCGRLEYAERVFKSINDPCLATWNSIISGYSLHGIEHQAFICYSELLEHGLKPDRITFLGVLSACTHGGLVLEGTEHFLIMTKEYDLMPDLQHCASMVGLLGRAGLFKEALEFINNMEIEPDSAVWGALLSACCIHQQVKLGECLAKKLFFLNNKNGGFYVLMSNLYAIVGRWDDVARVRYMMIESGGDGCSGVSVIQVASVEDINNNVLLDE 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02085 716 Pfam PPR repeat family 224 270 IPR002885 -
Bva06g02085 716 Pfam PPR repeat family 423 469 IPR002885 -
Bva06g02085 716 Pfam PPR repeat family 123 167 IPR002885 -
Bva06g02085 716 Gene3D Tetratricopeptide repeat domain 186 276 IPR011990 GO:0005515
Bva06g02085 716 Gene3D Tetratricopeptide repeat domain 277 372 IPR011990 GO:0005515
Bva06g02085 716 PANTHER OS07G0578800 PROTEIN-RELATED 217 313 IPR045215 GO:0003723|GO:0009451
Bva06g02085 716 Pfam PPR repeat 294 314 IPR002885 -
Bva06g02085 716 Pfam PPR repeat 599 621 IPR002885 -
Bva06g02085 716 Pfam PPR repeat 496 517 IPR002885 -
Bva06g02085 716 Pfam PPR repeat 395 420 IPR002885 -
Bva06g02085 716 Pfam PPR repeat 525 554 IPR002885 -
Bva06g02085 716 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 31 223 - -
Bva06g02085 716 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
Bva06g02085 716 Pfam E motif 639 701 IPR046848 -
Bva06g02085 716 Gene3D Tetratricopeptide repeat domain 521 706 IPR011990 GO:0005515
Bva06g02085 716 Gene3D Tetratricopeptide repeat domain 16 184 IPR011990 GO:0005515
Bva06g02085 716 Gene3D Tetratricopeptide repeat domain 375 520 IPR011990 GO:0005515
Bva06g02085 716 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 217 313 - -
Bva06g02085 716 TIGRFAM PPR: pentatricopeptide repeat domain 126 159 IPR002885 -
Bva06g02085 716 TIGRFAM PPR: pentatricopeptide repeat domain 423 456 IPR002885 -
Bva06g02085 716 TIGRFAM PPR: pentatricopeptide repeat domain 227 260 IPR002885 -
Bva06g02085 716 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
Bva06g02085 716 PANTHER OS07G0578800 PROTEIN-RELATED 31 223 IPR045215 GO:0003723|GO:0009451
Bva06g02085 716 Pfam Pentatricopeptide repeat domain 16 60 IPR002885 -
Bva06g02085 716 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 124 158 IPR002885 -
Bva06g02085 716 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Bva06g02085 716 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 316 714 - -
Bva06g02085 716 PANTHER OS07G0578800 PROTEIN-RELATED 316 714 IPR045215 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02085 Bva-Chr6 13840263 13842413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02085 34 699 Glycoside Hydrolase AT3G49170 30.914 1.02e-99 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02085 - - gmx:100787089 1001.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02085 06 13840263 13842413 Bva06g02085 06 13840263 13842413 ECH