Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01978 ATGTCTGGGCCGCTTGATCGGTTCGCACGGCCTTGCTTTGAAGGGTTCTCTGGTCATGATGAACGTAGAGAGCGGAAATCAGATTTTGAGAATTCAGAGGATGATAGGCGGACAAGAATTGGCAgtctgaaaaagaaagcaataaaTGCATCTAGCAAATTCAGGCATTCCcttaagaagaaaagtaagagaagAAGTGCCAGCCGGAAAAATTCCATCCCCATTGAGGATGTTCGAGATGTTGAGGAGCTTCAAGCAGTGGATGCATTTCGACAAGCACTAACGTCAGATGATTTGTTGCCTCCGAGACATGATGACTATCATATGTTATTGAGATTCCTTAAAGCAAGGAAGTTCGATATTGAGAAAGCAAAACAAATGTGGGCCAACATGATTCAATGGCGGAAAGACTATGGCACTGACACAATTATGGAGGATTTTGAGTTCAATGAGTTGAATGAAGTTCTGCAATATTACCCTCATGGTTATCACGGCATGGATAAGGAAGGAAAACCTGTATACATTGAAAGGCTAGGGAAAGTTGATCCTAATAAGCTTATGCAAGTAACTACCATGGATAGATATCTAAAATACCACGTACAGGGTTTTGAGAGAACATTTGCCGTTAAGTTTCCAGCTTGCTCTATCGCTGCGAAGAGACACATAGATTCAAGTACGACAATTTTGGATGTTCAAGGGGTGGGTTTCAAAAACTTCACCAAGTCTGCACGAGAACTCATCATGCGGCTACAGAAGATTGATGGTGACTACTATCCAGAAACATTATGCCGGATGTTTATCATCAATGCTGGTCCTGGTTTTAAGCTGCTCTGGAACACCGTAAAAACATTTCTTGATCCAAAAACAACTTCAAAGATTCATGTTCTTGGCAACAAGTTCCAGAGTAAATTACTTGAAATAATTGATGCAAGTGAGCTGCCAGAATTTCTTGGTGGTAGTTGTAATTGTGTTGATCAGGGCGATTGTATGAGGTCTGACAAGGGGCCATGGCAAGATCCCAATATTTTAAAGATGGTCCTTAATGGTGAAGTACAAAATCGGCAGATCGTAACAGTCTCTAACAATGAGAGGTCAGTGATTGAATGTGACAAGACATCATATCCAATGATAAGAAGTAGTGATACATCCACAGCAGAATCTGGGTCTGAAGTTGAAGATATTGCTTCCCCCAAAGCAAGTGGGAACTATATAAACCCTAGGTTGACTCCTGTCCACGAAGAAGCTAGATTAATCGGTAAGGCTAGCCATGCTGGAGGTTTCTTTGAATATGATGTGGATGTTCCTATGGTTGACAAGGCTGTCGATGTTGGATGGAAGGAGAAGCAAGCAATACCTCAAAGCACATATGGCTCCATAGACGCATGTCCGCCAAATAATAAATCTCGTGATGGAATCCGTGCTTACATCTGTGCTGTTATAGTGGGTTTCTTTGTTGCCCTCTTTACATTTGTCCCTTCGTTACCATTTCATGTCACTAAGGGAATTCAGAAATCTGAATCTGACTGTCCTGACAATACACCGAACATGACTATCGAATCAATTTCTGTGGAGGAAACTCGTCCTCCTCCTCCTGCTCCAGGTTTCACAAAGGCAGACCTCCTCTCATCTGCCATAAAACGGCTAGGCGAGCTTGAACAAAAGGTTGACCTGCTACAGTCAAAACCAAATGTGATGCCATATGAGAAGGAGGAACTTCTAAATGCTGCTGTTTATCGTGTGGATGCATTGGAAGCAGAGCTGATTGCTACTAAGAAGGCTTTATACGAAGCTTTGATGAGACAAGAAGAACTTCTTGCATACATAGATAGGCAGGATAACATCAAATTCAAGAAAACGAAGGCTTGCTGGTG 1871 0.4137 MSGPLDRFARPCFEGFSGHDERRERKSDFENSEDDRRTRIGSLKKKAINASSKFRHSLKKKSKRRSASRKNSIPIEDVRDVEELQAVDAFRQALTSDDLLPPRHDDYHMLLRFLKARKFDIEKAKQMWANMIQWRKDYGTDTIMEDFEFNELNEVLQYYPHGYHGMDKEGKPVYIERLGKVDPNKLMQVTTMDRYLKYHVQGFERTFAVKFPACSIAAKRHIDSSTTILDVQGVGFKNFTKSARELIMRLQKIDGDYYPETLCRMFIINAGPGFKLLWNTVKTFLDPKTTSKIHVLGNKFQSKLLEIIDASELPEFLGGSCNCVDQGDCMRSDKGPWQDPNILKMVLNGEVQNRQIVTVSNNERSVIECDKTSYPMIRSSDTSTAESGSEVEDIASPKASGNYINPRLTPVHEEARLIGKASHAGGFFEYDVDVPMVDKAVDVGWKEKQAIPQSTYGSIDACPPNNKSRDGIRAYICAVIVGFFVALFTFVPSLPFHVTKGIQKSESDCPDNTPNMTIESISVEETRPPPPAPGFTKADLLSSAIKRLGELEQKVDLLQSKPNVMPYEKEELLNAAVYRVDALEAELIATKKALYEALMRQEELLAYIDRQDNIKFKKTKACW 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01978 623 Pfam CRAL/TRIO, N-terminal domain 104 130 IPR011074 -
Bva06g01978 623 MobiDBLite consensus disorder prediction 13 42 - -
Bva06g01978 623 MobiDBLite consensus disorder prediction 49 68 - -
Bva06g01978 623 Gene3D - 139 350 IPR036865 -
Bva06g01978 623 Pfam CRAL/TRIO domain 157 319 IPR001251 -
Bva06g01978 623 Coils Coil 541 561 - -
Bva06g01978 623 CDD SEC14 152 319 IPR001251 -
Bva06g01978 623 SUPERFAMILY CRAL/TRIO domain 151 345 IPR036865 -
Bva06g01978 623 MobiDBLite consensus disorder prediction 1 73 - -
Bva06g01978 623 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 3 618 - -
Bva06g01978 623 MobiDBLite consensus disorder prediction 377 396 - -
Bva06g01978 623 PRINTS Cellular retinaldehyde-binding protein signature 109 131 - -
Bva06g01978 623 PRINTS Cellular retinaldehyde-binding protein signature 278 297 - -
Bva06g01978 623 SMART CRAL_TRIO_N_2 106 131 IPR011074 -
Bva06g01978 623 Gene3D - 58 138 - -
Bva06g01978 623 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 151 325 IPR001251 -
Bva06g01978 623 SUPERFAMILY CRAL/TRIO N-terminal domain 81 147 IPR036273 -
Bva06g01978 623 SMART sec14_4 151 322 IPR001251 -
Bva06g01978 623 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 3 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01978 Bva-Chr6 13318514 13323600 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01978 85 316 Acyl Lipid Metabolism Gene Families AT5G47730 29.046 3.91e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01978 - - gmx:100799316 991.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01978 06 13318514 13323600 Bva06g01978 06 13318514 13323600 ECH