Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01961 ATGTCAATGACtggtttctcttccttttccttttcgttaacttttcttctcctttttacATCCTCCGCTCTCTCCTCTTGCTCAGACACCTCTGAACTTTTTGAAAGCTGGTGCAAGCAACATGACAAAAACTACTCTTCCCAAGAGGAAAAGCTCTACAGGTTCAAGGTATTCGAGGATAACTATGACTTTGTTACCAGACACAATGAAATAGGCAATTCTGCTTatactctctctctcaatgCCTTCGCCGATCTCACCCACCATGAGTTCAAGGCCTCTCGTTTGGGCCTTTCCCCAGCCTTGCTCAGATTCGACCATCGCCTACTTCAGGAATCCGATGATCTTCTTCTTGATATTCCTTCCGAGATTGattggagaaagaaaggagCGGTTACCCAAGTCAAAGACCAAGGAAACTGTGGTGCTTGTTGGTCATTCTCGGCTACAGGAGCTATTGAAGGtataaataagattttcaCAGGGTCCCTTGTAAGCCTCTCCGAACAAGAATTGGTTGATTGTGATAGAACATACAATAACGGCTGTGATGGTGGACTCATGGACTATGCTTATCAATTTGTTATTGATAATAATGGGATTGACACAGAAGAAGATTATCCCTATCAAGGTCATCAGAGTACTTGCAATAAGGGAAAGTTAAGAAGGCGTGTTGTTACAATAGATGGTTATATCGACGTGCCACCAAATAATGAGAATCAGCTACTAAAGGCCGCAGCTAATCAGCCTGTCAGTGTAGGCATATGTGGCAGTGACAGAGCTTTTCAATTATACTCAAAGGGAATTTTTACTGGCCCTTGTTCAACTTCTTTGGATCATGCAGTGTTGATTGTAGGGTATGATTCAGAAAATGGAGTAGATTATTGGATTGTAAAAAACTCATGGGGAACAGGTTGGGGAATGAATGGTTACATACACATGCTACGAAACAATGGCGATTCCGATGGACTATGTGGAATCAACAGGCTAGCTTCATATCCAATGAAGACGACTCCTAATCCCCCCTCCCCATCTCCCCCAAGTCCTACTAGATGTGATCTTTTTACTTACTGTTCAGAGGGGGAAACGTGCTGTTGTGCCAGGCGCATTCTTGGATTCTGCATATCATGGAAATGCTGTGGATTAGCTTCTGCCGTGTGTTGCAAGGACCATCACCACTGCTGCCCCCAAGATTATCCCGTTTGTGATACAACAAGGGGCCAATGTCTTAAGAGAACTGCTAACGCGACGAGAATACAGGCTCTTGAAAAGGAAGGTCGTTCCGTAATTGGTTA 1295 0.41 MSMTGFSSFSFSLTFLLLFTSSALSSCSDTSELFESWCKQHDKNYSSQEEKLYRFKVFEDNYDFVTRHNEIGNSAYTLSLNAFADLTHHEFKASRLGLSPALLRFDHRLLQESDDLLLDIPSEIDWRKKGAVTQVKDQGNCGACWSFSATGAIEGINKIFTGSLVSLSEQELVDCDRTYNNGCDGGLMDYAYQFVIDNNGIDTEEDYPYQGHQSTCNKGKLRRRVVTIDGYIDVPPNNENQLLKAAANQPVSVGICGSDRAFQLYSKGIFTGPCSTSLDHAVLIVGYDSENGVDYWIVKNSWGTGWGMNGYIHMLRNNGDSDGLCGINRLASYPMKTTPNPPSPSPPSPTRCDLFTYCSEGETCCCARRILGFCISWKCCGLASAVCCKDHHHCCPQDYPVCDTTRGQCLKRTANATRIQALEKEGRSVIG 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01961 431 PRINTS Papain cysteine protease (C1) family signature 280 290 IPR000668 GO:0006508|GO:0008234
Bva06g01961 431 PRINTS Papain cysteine protease (C1) family signature 138 153 IPR000668 GO:0006508|GO:0008234
Bva06g01961 431 PRINTS Papain cysteine protease (C1) family signature 295 301 IPR000668 GO:0006508|GO:0008234
Bva06g01961 431 Pfam Papain family cysteine protease 120 335 IPR000668 GO:0006508|GO:0008234
Bva06g01961 431 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 295 314 IPR025661 -
Bva06g01961 431 SMART pept_c1 120 335 IPR000668 GO:0006508|GO:0008234
Bva06g01961 431 SMART GRAN_2 352 409 IPR000118 -
Bva06g01961 431 Pfam Granulin 363 410 IPR000118 -
Bva06g01961 431 Gene3D Granulin 350 421 IPR037277 -
Bva06g01961 431 CDD Peptidase_C1A 121 334 IPR039417 -
Bva06g01961 431 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 138 149 IPR000169 -
Bva06g01961 431 PANTHER OS05G0508300 PROTEIN 18 367 - -
Bva06g01961 431 Gene3D Cysteine proteinases 15 337 - -
Bva06g01961 431 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 18 367 - -
Bva06g01961 431 Pfam Cathepsin propeptide inhibitor domain (I29) 34 91 IPR013201 -
Bva06g01961 431 SMART Inhibitor_I29_2 34 91 IPR013201 -
Bva06g01961 431 SUPERFAMILY Granulin repeat 349 382 - -
Bva06g01961 431 SUPERFAMILY Cysteine proteinases 31 335 IPR038765 -
Bva06g01961 431 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 278 288 IPR025660 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01961 Bva-Chr6 13240264 13243127 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01961 - - jre:108991338 648.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01961 06 13240264 13243127 Bva06g01961 06 13240264 13243127 ECH