Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01939 ATGGATGACGAAGATAAGAGGTCTCGAACCAGGAAAAGATCGAAGCCGGTTGAAATTGGTTTTGATTCGGATGATGACGAGCCCATTGGGTCTGTATTTAAGTTGAGGAGGCCGCGTAACTCCAAGAAGCTTACTTTGGCAGCAGAGGGCACCGGTGATGGAGGCAGGGACTACGAGgctaatgggaaaaaaaaggcTCCTGCAGAAGGGGATTTGGGGGGCATGGATGACACGTTGGCTAATTTTAGGAAGAGGTTGAAGGGTCCCAAGAGAGATCAGGGAACTGGAACCACGAGGGGAAGAAATTCTGCTTTGAAAGTCTCTATTGATAACTCTTTCAATGGTTCTCTTGAGGATGTGATTTCTGATAAGAAATCGAGGTTGAATAATGTCGGTGAAGAGCGGGCTCTGGATGATAAGGGATCAGATTTGACTACGCATATAAAGTTCACAAATAGCTTTCAAGGAAAGGTAGAAACACCTAATGTGGATCCGACACCTAGGGGAATTGAGGGTAATGCTATGCCTGAAGATGATTTAGTAGCTAGGGAAAGTAGGAATATGTCTAAGGATGAGAAGGTGGTGGCTTTGTTGCCTGGACAAGGTTTGCAGCACTCTTGTGATGATCATAAGGAAGATTCGTTGTCAGCTATTTTCCAAAAGGCtcaatctaatttaattaggaaATCTCGCTCGTCAAgttcaaaacagaaaaataggaATCAAATTGTGGGTGATGACTTGAACCCTGTTTCCAATAGTGTTTCAGAAACTCTAGAGTCTGTGACTGAAAGGACATCTAAACCTGCCACTGCTTCTGCCTCAAAATTGGTCCAGAGAAATCTGAAATCGAATAATGATTTGCCTCAGGCATCTTCAATGGATAATCAAAAGTTTGATGATGACAATCTTCAAGAGGAAACTGTTGACGGTTATTGTGATTCAGACATTCAAGATGGCCCTGCAATTGATCCTTGTCACTCTATGAATGTCTGCAATGGAGATAGCCTGCGATTGTCTAGTGTTCAAGTAGAAGATATTTGTTCTTCTTCCCAGCAAAATATTGCATCACAAGAAAGAGCTCTTGATAATGGTTTAAAGCAGTGTTCTACTACATTAAATGACGTTGAAGAAATGGTTTATGCTGATTGTGTCCCTGTAGCAGGGGAAGGGTTATTTGAGCTTAGCAAGGTTAAGTTGAAGAGAAGTTCCATTGAGGTTTTAGCCCAATTGTGCAATAGTAATACTGAACATGGTGGTTTTAATtcaatagagaaagaaatttcctTACCTCCTCCTGAATGTGAGACCTTGAACACATTAAGTGAAAATATGTTGAACATgagtaataaaaaagtttctgGAAATGTTGTGGAGGGATTGACAAGAATCGGAGCTCGAGAATTCTATGGCTGCAATGCAAAGATAGATGGAGGAGTGGAGTCTGAAACTTCTGGAAGAATTTGCCATGATTGTGATAGTATAGATATGAAGGCTCAAGATCAAGATCTCATTATAGGTTtttcacatgaaaaaaatGCTGTAACCTCTTCTGGTAGTTTATCTCCTATGGCATCTAGTGAAGCCTATGAATCTGAATCAGCTATCCAATTAAACCACTCAGAGAAACCTTTAGAAACTTGTATTATTCCAAATGACTCTATTGCTTCTATTGAGAAATGCAGCATGGTGTTACATCCGATTGAAACTTTGGATGATACATTCAAAGAGGGTTCTCATCTAAATGATGATTGCCTGCATGCCAAGAAAGAAGTTGATGAAGCCTCTCCTCAATCTACAGTTCCTGATGAAAATGAGAATTGCACAGACTACAGAGTCTCTGGGTCTGGCTTTGTCAATAAAGATGTTAAGATATCTGTTGTTCAGCGGGCTGTTCGGAAGACCAAAAAGTGTAGGCATGGAGATATGGCTTATGAGGGAGATGCTGATTGGGACATTTTAATAGATGACCGAGATTTTCTTGAAAGCCAAAGTGTTGTTGATGGTGACTGCGCTCTTAGAACGAAAGTGAACCTTGATTCCTCTTTAAGTGTTATTGAAGAGTCTGAAAGTGTTGCAGCAGCAGTATCGGCAGGGCTGAAAGCCCATGCAGCTGGTCCAATGGAGAAGATAAGATTTAAGGAGATCTTGAAGCGTAAAGGTGGTCTTCGCGAGTACTTGGATTGCAGaaatcaaatattaagtCTTTGGAGCAGAGATGTCACTCGTATCTTGCCTCTTGCTGACTGTCGAGTTAGTGCTACTCAAGAACCTTCTCGTTCTTCTCTTATTAGGGAAGTCTATGCATTTCTGGATCAATGTGGTTATATAAACGTTGGAGTTGCCTCAGAGAAGGAGAAAGCTCCAACTAGTGCAAGGCATAGTTATGAAGTTGTAAAAGAGAGAGGATTTGAGGAGAGTTCCTCAGCTTCCATGGCTGACTCAGAAGATGGTGTTTCCTTTATTGTTGGTCAAGCAAAAAGATCAGATACTTCCATGGAGGTGAAGAATGGCCTAATGGaatattatgaaaatgttACACCTGAAGCTATGGAAAACAAGAGACATGATGACCCAGCAGTGCTGCATTTATTGAATGTGGCACAacaagaggaaagaaaaattgatggaAATCAGGGAAATGGTGGTATTCAGACAGGATCAAATGAGCTTCAACATTTGGATGTTGACATTTCTGATCCTTCTTGCAAGATTTCTGAGTGCAAAGTGACTTTTGTTGCAGCTAGTGAGCAAATAACTGAAGATACCTGTATTAAATCTGCATTAGATGATCGGGTAGTTGATGTTGTGCAGTCTGATTCAGATGCCAGAAAGAACGTAATTGTCATAGGAGCTGGTCCTGCTGGGTTGACTGCTGCTCGCCACTTGCAACGACAGGGTTTTCCTGTGATTATACTTGAATCTAGGAGTAGGATAGGAGGCCGAGTATTTACAGACCACACATCTCTTTCTGTCCCTGTGGATGTTGGTGCTAGCATTATCACTGGTGTTGAGGCTGATGTGGCCACTGAGAGAAGACCAGATCCTTCCTCACTGGTTTGTGCTCAGTTAGGACTTGAGTTGACTGTGCTGAACAGTGATTGTCCTCTTTATGACATAATAACAGGTCAAAAGGTTCCTGCAGATATGGATGAAGCATTGGAAGCTGAATACAATAGTCTTCTTGATGACATGATATTGCTTGTTGCTCAAAAGGGTGAACAGGCAATGAGAATGTCTCTTGAAGATGGTTTAGAATATGCCCTTAAGAGGAGGCGAATGGCACGGTCTGGGAGAACCAGTGAAGAGATTGAACAAAATTCTGTGGGTGCTTCATTTGATTCTGAGGGAAAGATTTTTCAAGAGGTTTTAAGTCCTCCAGAGAGGAGGGTTATGGATTGGCACTTGGCTAATTTGGAATATGGTTGTGCTGCTCTGCTTAAGGAAGTTTCTCTTCCTTACTGGAATCAAGATGATGTATATGGAGGGTTTGGGGGAGCTCACTGTATGATTAAAGGGGGTTACAGCTCTGTTGTTGAGTCTCTAGGAGAAGGACTCGTCATTCACTTGAACCATGTTGTAACCAATGTGTCCTATGGAAAGGAGCCTGGTCAGAATAATAAAGTCAAAGTTTCTACCTCAAACGGAAATGAGTTCTTTGGAGATGCTGTTCTGATCACTGTACCACTAGGCTGTTTGAAGGTGGAAAGCATAAAATTCTCTCCACCTTTGCCCCAGTGGAAATGTTCTTCTATTCAGCGCCTTGGTTTTGGACTTCTTAATAAAGTGGTTATGGAATTTCCTAATGTTTTTTGGGATGATACAGTGGACTACTTCGGGGCAACAGCGGAGGAAACAAGCAGAAGAGGCAACTGTTTCATGTTCTGGAATGTCAGAAAAACTGTCGGTGCTCCTGTGCTCATAGCACTAGTTGTTGGTAAGGCAGCAATAGATGGTCAAAATTTGAGCTCCTCTGATCATGTTAACCATGCATTAATGGTTCTTCGTAAACTTTTTGGAGAGAATTCAGTACCTGATCCTGTTGCATATGTAGTGAGTGATTGGGGTCGGGACCCATTTAGCTATGGTGCTTACTCCTATGTTGCTGTTGGAGCATCTGGGGAAGATTATGATATATTAGGGAGGCCAGTTGATAACTGCTTGTTTTTTGCTGGTGAGGCGACCTGTAAAGAGCACCCTGACACGGTTGGCGGTGCAATGATGAGTGGACTCCGGGAGGCTGTGCGAATAATTGACATATTGAGAACTGGAAATGACTATACTGCAGAAGTTGAGGCAATGCAAGCTGCAAAGAGACAATCAGATACCGAGAGGGATGAAGTTAGGGATATAATGAAAAGACTAGATGCAATAGAGCTTTCTAATGTCTTGTACAAGAACTCCTTAGGTGGTTCTCAAGTCTTAACTCGGGAAGCGCTACTAAAGGATATGTTCCTTAATGCCAAGACAAATACTGGGCGCTTGCATGTGGCCAAACAATTATCGAGTCTTcctgtggaaagtttgaggtCCTTTGCTGGGAGTAAAGAGGGCCTTACCATTCTTAACTCATGGATACTGGACTCAATGGGGAAGGATGGGACCCAACTCTTGCGGCATTGTGTGCGTCTTCTTGTGCTTGTTTCAACTGATTTACTAGCTGTGCGATTATCAGGCATAGGGAAAACAGTGAAGGAAAAAGTTTGTGTACACACTAGCCGTGATATCCGTGCTATAGCAAGCCAATTGGTTAGCGTATGGCTTGAAATTTTCCGCAAGGAAAAGGCTTCTAATGGTGGATTGACGCTGTCAAGACAAGCAACTGCTATTGATTTGTCAAAGAGAAAACTTCTTAAAGATTCAATTTCAGGAAAGCCACCCCCAAGCATGCATTATGGTGCTTTTGAGAGTAAAGGAGGCTTGTCTGCACCTGCATCTGGTGTAAATGATTCACCTGCCATATCAACTGTGAAGAAACCGCAAAGCAAACAAGTAAAACAACAAACAGCAAATGACTCAAGGCTTGAGGTCAGTTCTTCCAGGTGTCAAGGCTCAATAGGCAAAGTAGTTAATGAGAAGGCAGATAACCTTTATACTATGTCTGAAGAAGAACAGGCAGCCATTGCTGCTGCAGAAGCTGCACGTGCTAAGGCTCTTGCTGCTGCTGAGgCATATGCTTCTGCAGAAGCCAGGTGCAATACACTGCTGCAGCTCCCGAAGATACCTTCTTTCCACAAGTTTGCTAGGCGGGGGCAGTCTTCACAGAATGATGACTGCGATAGTAGAAAAAAGTGGTCTGGTGGTGTTTTGGGAAGGCAAGACTGTATTTCTGAGATAGATTCTAGGAATTGCAGGGTTAGGAATTGGTCTGTTGATTTTTCTGCTGCTTGTGTTAACCTAGACAATTCTAGAATATCCGTGGATAACCTCTCACAGCGGAGTCATTCAAATGAGATTGCCAACCATCTGAATTTCAGAGAGCACTCAGGAGAAAGTGTTGCTGTAGACAGTAATATATTCACAAAGGCGTGGGTTGATGCAGCTGGTAGTGTGGGGATTAAAGACTATCACGCCATTGAGAGATGGCAATCTCAAGCAGCTGCTGCTGATTCTGATTTTTCTAACCCAACCATATATGTGAATGATGAGGAGGATTCAAACACATGTGCAAGACTACTCAGCTGGAAGCCTGATGGCATGGCAAATGAGAGCTCCATTTCACAGGTTACCATAAATAATGAGGCTTCAAAAAGTCATCCTCGAGGAGCGGATCGTATCAAACAGGCTGTTGTGGATTATGTTGCATCTCTGCTCATGCCCCTTTATAAGGCAAGGAAACTAGACAAAAGTGGGTACAAGGctataatgaagaaaagtgcAACCAAGGTGATGGAGCAAGCCACCGATGCAGAAAAAGCCATGGCTGTTTATGAGTTTCTTGATTTTAAGCGAAAGAATAAGATTCGCTCCTTTGTGGATAAAATGATTGAAAGACACATGGCAATGAAACCAGACGTGAAATCTTA 6026 0.4134 MDDEDKRSRTRKRSKPVEIGFDSDDDEPIGSVFKLRRPRNSKKLTLAAEGTGDGGRDYEANGKKKAPAEGDLGGMDDTLANFRKRLKGPKRDQGTGTTRGRNSALKVSIDNSFNGSLEDVISDKKSRLNNVGEERALDDKGSDLTTHIKFTNSFQGKVETPNVDPTPRGIEGNAMPEDDLVARESRNMSKDEKVVALLPGQGLQHSCDDHKEDSLSAIFQKAQSNLIRKSRSSSSKQKNRNQIVGDDLNPVSNSVSETLESVTERTSKPATASASKLVQRNLKSNNDLPQASSMDNQKFDDDNLQEETVDGYCDSDIQDGPAIDPCHSMNVCNGDSLRLSSVQVEDICSSSQQNIASQERALDNGLKQCSTTLNDVEEMVYADCVPVAGEGLFELSKVKLKRSSIEVLAQLCNSNTEHGGFNSIEKEISLPPPECETLNTLSENMLNMSNKKVSGNVVEGLTRIGAREFYGCNAKIDGGVESETSGRICHDCDSIDMKAQDQDLIIGFSHEKNAVTSSGSLSPMASSEAYESESAIQLNHSEKPLETCIIPNDSIASIEKCSMVLHPIETLDDTFKEGSHLNDDCLHAKKEVDEASPQSTVPDENENCTDYRVSGSGFVNKDVKISVVQRAVRKTKKCRHGDMAYEGDADWDILIDDRDFLESQSVVDGDCALRTKVNLDSSLSVIEESESVAAAVSAGLKAHAAGPMEKIRFKEILKRKGGLREYLDCRNQILSLWSRDVTRILPLADCRVSATQEPSRSSLIREVYAFLDQCGYINVGVASEKEKAPTSARHSYEVVKERGFEESSSASMADSEDGVSFIVGQAKRSDTSMEVKNGLMEYYENVTPEAMENKRHDDPAVLHLLNVAQQEERKIDGNQGNGGIQTGSNELQHLDVDISDPSCKISECKVTFVAASEQITEDTCIKSALDDRVVDVVQSDSDARKNVIVIGAGPAGLTAARHLQRQGFPVIILESRSRIGGRVFTDHTSLSVPVDVGASIITGVEADVATERRPDPSSLVCAQLGLELTVLNSDCPLYDIITGQKVPADMDEALEAEYNSLLDDMILLVAQKGEQAMRMSLEDGLEYALKRRRMARSGRTSEEIEQNSVGASFDSEGKIFQEVLSPPERRVMDWHLANLEYGCAALLKEVSLPYWNQDDVYGGFGGAHCMIKGGYSSVVESLGEGLVIHLNHVVTNVSYGKEPGQNNKVKVSTSNGNEFFGDAVLITVPLGCLKVESIKFSPPLPQWKCSSIQRLGFGLLNKVVMEFPNVFWDDTVDYFGATAEETSRRGNCFMFWNVRKTVGAPVLIALVVGKAAIDGQNLSSSDHVNHALMVLRKLFGENSVPDPVAYVVSDWGRDPFSYGAYSYVAVGASGEDYDILGRPVDNCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILRTGNDYTAEVEAMQAAKRQSDTERDEVRDIMKRLDAIELSNVLYKNSLGGSQVLTREALLKDMFLNAKTNTGRLHVAKQLSSLPVESLRSFAGSKEGLTILNSWILDSMGKDGTQLLRHCVRLLVLVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVSVWLEIFRKEKASNGGLTLSRQATAIDLSKRKLLKDSISGKPPPSMHYGAFESKGGLSAPASGVNDSPAISTVKKPQSKQVKQQTANDSRLEVSSSRCQGSIGKVVNEKADNLYTMSEEEQAAIAAAEAARAKALAAAEAYASAEARCNTLLQLPKIPSFHKFARRGQSSQNDDCDSRKKWSGGVLGRQDCISEIDSRNCRVRNWSVDFSAACVNLDNSRISVDNLSQRSHSNEIANHLNFREHSGESVAVDSNIFTKAWVDAAGSVGIKDYHAIERWQSQAAAADSDFSNPTIYVNDEEDSNTCARLLSWKPDGMANESSISQVTINNEASKSHPRGADRIKQAVVDYVASLLMPLYKARKLDKSGYKAIMKKSATKVMEQATDAEKAMAVYEFLDFKRKNKIRSFVDKMIERHMAMKPDVKS 2008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01939 2008 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1516 1599 IPR035441 -
Bva06g01939 2008 MobiDBLite consensus disorder prediction 156 177 - -
Bva06g01939 2008 Pfam SWIRM domain 705 778 IPR007526 GO:0005515
Bva06g01939 2008 Pfam Flavin containing amine oxidoreductase 955 1418 IPR002937 GO:0016491
Bva06g01939 2008 Gene3D - 690 793 IPR036388 -
Bva06g01939 2008 MobiDBLite consensus disorder prediction 1 33 - -
Bva06g01939 2008 MobiDBLite consensus disorder prediction 1648 1677 - -
Bva06g01939 2008 MobiDBLite consensus disorder prediction 78 94 - -
Bva06g01939 2008 MobiDBLite consensus disorder prediction 56 71 - -
Bva06g01939 2008 MobiDBLite consensus disorder prediction 1 105 - -
Bva06g01939 2008 Gene3D - 947 1416 IPR036188 -
Bva06g01939 2008 PANTHER FLAVIN MONOAMINE OXIDASE 626 2004 - -
Bva06g01939 2008 MobiDBLite consensus disorder prediction 224 275 - -
Bva06g01939 2008 MobiDBLite consensus disorder prediction 1643 1677 - -
Bva06g01939 2008 Gene3D - 1044 1373 - -
Bva06g01939 2008 SUPERFAMILY FAD/NAD(P)-binding domain 944 1421 IPR036188 -
Bva06g01939 2008 SUPERFAMILY FAD-linked reductases, C-terminal domain 1256 1367 - -
Bva06g01939 2008 SUPERFAMILY Homeodomain-like 691 786 IPR009057 -
Bva06g01939 2008 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 626 2004 - -
Bva06g01939 2008 Coils Coil 1434 1454 - -
Bva06g01939 2008 ProSiteProfiles SWIRM domain profile. 691 788 IPR007526 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01939 Bva-Chr6 13132072 13142579 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-SWI3 Bva06g01939 Amino_oxidase 4.9e-106 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01939 - - aprc:113846105 2403.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01939 06 13132072 13142579 Bva06g01939 06 13132072 13142579 ECH