Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01937 ATGGCCAGTATTGCTCTCACAACAGAAACACAACTTGTCCATGCTGGCAATCCTGTGAAACATAAGTTAACCAATCAGGAGCAATCACGGGGATCAGCGTCCTTTTCTCAAATCTCTAATCCGTCGGCAGTGAGTCCACTTTCAACCTCCAAAACCCCAACTCGCGACTCATTCGAAGatttcctttctttttcgatGGCTCGTACAAAGCAAACTGCTCGCAAATCAACTGGTGGAAAGGCTCCTAGGAAGCAGCTCGCCACCAAGGCTGCAAGGAAATCTGCTCCTACAACTGGTGGAGTTAAGAAGCCTCATCGTTATCGTCCTGGAACTGTTGCCCTCCGTGAGATTCGGAAGTACCAAAAAAGCACTGAGCTGTTGATCCGCAAGTTGCCTTTTCAGCGTCTTGTTCGTGAAATTGCTCAGGACTTCAAGACGGATTTGAGATTCCAGAGCCATGCGGTCCTTGCTCTTCAGGAGGCTGCGGAGGCTTACTTGGTGGGTTTGTTCGAAGACACCAACTTGTGTGCTATTCACGCCAAGAGGGTCACCATAATGCCTAAGGACATCCAACTTGCCAGGCGTATCCGTGGGGAGCGTGCTTA 605 0.486 MASIALTTETQLVHAGNPVKHKLTNQEQSRGSASFSQISNPSAVSPLSTSKTPTRDSFEDFLSFSMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01937 201 SMART h35 99 201 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bva06g01937 201 PRINTS Histone H3 signature 145 163 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bva06g01937 201 PRINTS Histone H3 signature 99 120 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bva06g01937 201 PRINTS Histone H3 signature 123 140 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bva06g01937 201 PRINTS Histone H3 signature 68 82 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bva06g01937 201 PRINTS Histone H3 signature 82 96 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bva06g01937 201 PRINTS Histone H3 signature 163 179 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bva06g01937 201 PRINTS Histone H3 signature 179 200 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bva06g01937 201 ProSitePatterns Histone H3 signature 1. 80 86 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bva06g01937 201 PANTHER HISTONE H3 46 201 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bva06g01937 201 MobiDBLite consensus disorder prediction 16 54 - -
Bva06g01937 201 MobiDBLite consensus disorder prediction 69 106 - -
Bva06g01937 201 ProSitePatterns Histone H3 signature 2. 132 140 IPR000164 GO:0000786|GO:0003677|GO:0030527
Bva06g01937 201 Pfam Core histone H2A/H2B/H3/H4 66 197 IPR007125 GO:0003677
Bva06g01937 201 SUPERFAMILY Histone-fold 67 198 IPR009072 GO:0046982
Bva06g01937 201 PANTHER - 46 201 - -
Bva06g01937 201 MobiDBLite consensus disorder prediction 21 54 - -
Bva06g01937 201 Gene3D Histone, subunit A 67 201 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01937 Bva-Chr6 13117559 13119195 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01937 K11253 - ppp:112294954 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01937 06 13117559 13119195 Bva06g01937 06 13117559 13119195 ECH