Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01842 ATGCATGGTTTCAGAGCAAGAGTTGCTCTGCAATCAATTGCAGGGTCCCTTTGCAAATGCAAGTGGCATGAACATGGAGGTAAAATGCTCACTGGCGAATCGGAAATCTGTCGAACCCTCACCACGACAGCAGATTCAAATGCAGGTGCTGATTTTTTGGAATGCGGGGCAGGCTTGACTACACGGTCTATGCAAACGCTAATTGTTCGTGCACTTCGCTTGGGTGACAGAAGTAGGGCTTCCAACCTACTTTTAGATTTTGCTTACGGCAGCCCCTCATTAAGAGCCGATGATTTTGTTGGCATCTTTAAGTACTGTGCAAAGTCACCTGATCCATTGTTTGTTATGGAGATTTGGAGATTAATGGAGGCAAGAGATATTAGGCTGAATGATAAATGCTcctttttgatgatgaaagCTCTTTGCAAAGGGGGTTACTTGGAAGAGgctcttagtatgataaaatttcttgGAGAAAGTCGGCACCTGTACCCAATTCTTCCTCTATACAATAGTCTTTTACATGCCTGCACAGAAATGCAGAGCATAAGTCATGCAAGCTACTGTTTGGACTTGATGGAAAAGCGGATGGTgggaaagaatgaaattacGTATACAGAGCTTCTCAAGCTTGCAGTTTTGCAGAAGAACTTGCCTGCACTCCATCAAATTTGGGAGGACTATATTAAACACTACAGTATGAACATCATTGCTTTGCGTAAATTTATATGGTCATTTACAAGGTTGGGAGATCTAACATCTGCATATAAAGCTCTGCAACAGATGGTTTCTTTAGCCATCAGGGAAAACGTTTCTATTGTTAGAAGAACTAGTGGAAAGTTGTATTCAACTAGGTTGGACATCCCTGTACCTTCAAGGAGGGAGATTGGCTTAACCATATTGAACTTGGAGGAGAAGAAACAATCAGATTTGTGTACATACTCTCCCATGTACTATCAAGATGCAAATTCTGCATGTGTAGAGCAGCAAACTATAACTAATATGGGATATAAAGTTCAGGATGCCAAATCAGGGAGGCTGAATGAACAAACGCACAGATTGGTTATGATGGTTCTGAGGTGGTCCTTTAGTGAGGTGATACATGGATGTGcacaagataaaaattatggcCTTGCTGAGCAGCTTATTTTAGAGATGCAAAATCTTGGGTTGCAGCCAACCAGCCATACATATGATGGCTTTGTTAGAGCCGTTGTTTCCCAAAGAGGTTTCAATTATGGCGTGGAAGTGTTAAAAGTAATGCAGCAGAATAATTTGAAGCCATATGATTCAACTCTAGCAGTGGTTTCAGTCAGTTGCAGTGAGGCACTAGAACTAGATATAGCTGAGGATCTGCTGAATCAAATTTCTGAATGTCCCTATCCATATCCTTGTAATGCTTTACTTTCATCATGTGATAAAATGAACCAACCTGAACGTGCTGTGCGGGTCTTTGCCAAGATGAAGCAGATGAAACTTTTACCTGATATCAGGACATATGAgctattattttcattatttggtAATGTAAATCCCCCATACGAAGAGGGCAATATGCAGTCACAGGTAGATGCTGCTAAAAGGATAGACGCTATAGAAAGGGATATGGCCAGAAATGGTATTCAGCACAGTCATCTTTCAATGAAAAACCTGTTGAAAGCCCTTGGAGAAGAAGGGATGATAAGAGAGCTGATCCAATATTTACTTGTGGCAGagaatctttttatttttagtaaccCTTCTTCCCGAACTGATATCTACAATGTAGTGTTACGTTCTCTTGTTGATGCCAAAGAAAGTCGTATGgcaattgaaattttcaagagGATGAAGTCATGTGGTTGCCAGGCCAATGCTGCAACATACCATATAATGATTGATTTCTGTAGGATCCTTAGATGTTTCAAATCCGCttctttgttaatttcaatGATGATACGTGATGGTTTTTATCCAAAGACTCCTACATATACTGCTCTTATTAAGATTCTGTTGGAagatgagaactttgaagaaaCTTTGAATCTTTTGGATCAGGCGAGATCAGATTGCGTTGATCTTGATGTGATATTGTTTAATACGGTCATTCGAGAAGCATGTGACAAgGGAAGAATCGATGTGATTGAGTTGATTTTGGAGTGCATGCACCAAGAGAAAATTCAGCCTGATTCTACAACATGCAGCTATGTGTTCTCTGCATATGTAAACTGTGGGTTTGACAACACAGCAATAGAAGCACTGCAGGTTTTAAGCATGAGAATGATACGTGAGTATGATGAGGTCTTTCACTGGAAAGATTTCGTGGATGAATTCATCCTTGCTGAAGATTTGGCTGCTGAgttaaagataattaaattatttgaagattCTAAGGAGAATCTTGCCTTTGCCGTCCTGAATTTGCGATGGTGTGCTATATCTGGTTTCCCGATCTGTTGGTCTGCTGATCAAAGCCCGTGGACTAAAAGACTGAAACTGCAGTA 2483 0.3806 MHGFRARVALQSIAGSLCKCKWHEHGGKMLTGESEICRTLTTTADSNAGADFLECGAGLTTRSMQTLIVRALRLGDRSRASNLLLDFAYGSPSLRADDFVGIFKYCAKSPDPLFVMEIWRLMEARDIRLNDKCSFLMMKALCKGGYLEEALSMIKFLGESRHLYPILPLYNSLLHACTEMQSISHASYCLDLMEKRMVGKNEITYTELLKLAVLQKNLPALHQIWEDYIKHYSMNIIALRKFIWSFTRLGDLTSAYKALQQMVSLAIRENVSIVRRTSGKLYSTRLDIPVPSRREIGLTILNLEEKKQSDLCTYSPMYYQDANSACVEQQTITNMGYKVQDAKSGRLNEQTHRLVMMVLRWSFSEVIHGCAQDKNYGLAEQLILEMQNLGLQPTSHTYDGFVRAVVSQRGFNYGVEVLKVMQQNNLKPYDSTLAVVSVSCSEALELDIAEDLLNQISECPYPYPCNALLSSCDKMNQPERAVRVFAKMKQMKLLPDIRTYELLFSLFGNVNPPYEEGNMQSQVDAAKRIDAIERDMARNGIQHSHLSMKNLLKALGEEGMIRELIQYLLVAENLFIFSNPSSRTDIYNVVLRSLVDAKESRMAIEIFKRMKSCGCQANAATYHIMIDFCRILRCFKSASLLISMMIRDGFYPKTPTYTALIKILLEDENFEETLNLLDQARSDCVDLDVILFNTVIREACDKGRIDVIELILECMHQEKIQPDSTTCSYVFSAYVNCGFDNTAIEALQVLSMRMIREYDEVFHWKDFVDEFILAEDLAAELKIIKLFEDSKENLAFAVLNLRWCAISGFPICWSADQSPWTKRLKLQ 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01842 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Bva06g01842 827 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 825 - -
Bva06g01842 827 Pfam Pentatricopeptide repeat domain 463 509 IPR002885 -
Bva06g01842 827 Pfam Pentatricopeptide repeat domain 676 736 IPR002885 -
Bva06g01842 827 Pfam PPR repeat 362 391 IPR002885 -
Bva06g01842 827 Pfam PPR repeat 137 155 IPR002885 -
Bva06g01842 827 Gene3D Tetratricopeptide repeat domain 581 769 IPR011990 GO:0005515
Bva06g01842 827 Gene3D Tetratricopeptide repeat domain 61 237 IPR011990 GO:0005515
Bva06g01842 827 Gene3D Tetratricopeptide repeat domain 462 580 IPR011990 GO:0005515
Bva06g01842 827 Gene3D Tetratricopeptide repeat domain 302 461 IPR011990 GO:0005515
Bva06g01842 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 688 722 IPR002885 -
Bva06g01842 827 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 583 617 IPR002885 -
Bva06g01842 827 Pfam PPR repeat family 586 629 IPR002885 -
Bva06g01842 827 TIGRFAM PPR: pentatricopeptide repeat domain 465 497 IPR002885 -
Bva06g01842 827 TIGRFAM PPR: pentatricopeptide repeat domain 362 394 IPR002885 -
Bva06g01842 827 TIGRFAM PPR: pentatricopeptide repeat domain 586 618 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01842 362 791 Glycosyltransferase AT1G05670 19.873 9.01e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01842 - - qlo:115974617 1013.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01842 06 12672847 12679252 Bva06g01842 06 12672847 12679252 ECH