Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01835 ATGGACTTTCGCCTAGTCTTTATCACTTCCATTCTTTTGTTACAGgtttttctaattttatctatGGTAGAAGCAGAGGATTTGACCACAAGGCTTCTTTTGACATCCAATGTCGAAATTCAGGGgAGAAGGCATTCGGAGGGTTATTGTGCAATGTATGACATCTGTGGCAAACGCAGTGACGGAAAAGTACTGAATTGCCCATTCGGCTCCCCAGCTGTGAAGCCAGATGATTTGCTTTCATCAAAGATCGAAAGTTTGTGCCCAACAATTACAGGCAATGTTTGTTGTACTGAAACTCAGTTTGGCACATTACGAAGCTCAGTCCAACAGGCAATTCCTTTTCTTGTAGGTTGTCCAGCATGCTTAAGGAACTTTTTGAATCTGTTCTGTGAGCTTACATGCTCTCCAAATCAGAGTTTATTTATCAATGTGACTTCAGTTGCTCAGGTTGGTGATAATAAGACAGTGGATGGAATTGATTTCTATGTGACTGACACTTTTGGTCAAGGGTTATATGAGTCCTGCAAGGATGTGAAGTTTGGAACCGCAAATACTCGagctataaattttattggtgCTGGggctcaaaattttaaagAGTGGTTTGCCTTTATTGGTCGAAAAGCTAGCCCTAATCTTCCTGGTTCACCATATCCAATTACATTCCGGCCAAACCCTACCAAGTCATCGGACATGAAACCCATGAATGTTTCAACTTATTCATGCAGTGATATTTCTCTTGGATGTTCTTGTGGTGATTGTCCTTCATCATCAGAATGCACCAAAACAGCGCCTCCTATCACCCACAAGAGAGATTCCTGCTCCATTAGAGTTGGGTCTTTAATGGTGAAGTGTATTGACTTGATTTTGGCAGTTTTATACATCATACTGATTTCTGTGTTTTTGGGTTGGGGATTATGTCATCgaatgagagaaagaaatccAGGATCTAGAACAAAATCAGTGCCTAGCGTTGTTACTGGTGGTGTGTTGCACTCTGTCAACACGCAAAAGGATGAGAACCTCCCCATGCAGATGCTTGAAGATGCCCCACAAATCAGAAAAGGAGTCCAGCTCTCAGCTGTGCAAGGTTACATGTCAAATTTTTACAGGATATACGGATCTTATGTGGCTAGGAATCCaaaaatggttttattttcatcactggctatatttcttctactttGTCTAGGTCTGATCCGATTCAAGGTTGAGACACGGCCAGAGAAGCTCTGGGTAGGGCCTGGGAGTAAAGCTGCACAAGAGAAGCAATTTTTTGACAGCCATCTTGCTCCCTTTTACAGAATTGAACAGCTGATACTGGCAACGATTCCAGATCCTGTGAATGGTATGTCACCAAAAATTGTGTCAGAGGACAACATTAAGTTTCTTTTCGAAATACAAAAAAAGGTTGATGCAATTCGAGCTAATTACTCTGGGTTGATGGTATCTCTTGATGATATCTGTATGAAGCCATTAGGTGAAGAATGTGCCACTCAAAGTGTCCTGCAGTACTTTAAAATGGATCccaaattttttgataattatggAGGAGTTGAACATCTGAATTACTGCTTTGAGCATTATTCCTCAGCAGACGAATGTATGAGTGCATTTAAAGGTCCTGTTGATCCTAGCACTGTATTAGGAGGTTTCTCTGGGAGCAATTACTCTGAGGCATCTGGATTTGTTATAACTTATCCCGTGAATAATGCTATTGATGAAGGAGGGAATGAAATTGTAAAGGCAGTTGCTTGGGAGAAGGCCTATATTCAGTTGGTGAAGGATGAGCTGCTACCAATGGTGCGGtcaaaaaatttgacattgtCTTTTTCGTCTGAAAGCTCTATTGAGGAAGaactaaaaagagaaagtactGCTGATGCCATTACTATATTGATAAGCTATCTTGTGATGTTTGCTTATATATCTCTTACTTTAGGGGATATACCACACCCTTcttctttctatgtttcatcTAAGGTATTGCTTGGTCTTTCTGGAGTGATTCTTGTCATGCTTTCTGTCCTTGGTTCAGTTGGATTTTTTAGTGCTGTTGGTGTAAAGTCTACGCTGATCATCATGGAAGTTATTCCATTTCTTGTTCTAGCGGTTGGGGTGGACAATATGTGTATACTAGTTCATGCTGTAAAGAGGCAACAAGTGGAGTTGCCTTTGGAAGGAAGAATAAGCAATGCACTTGTGGAAGTTGGACCATCCATAACATTAGCTAGTGTAGCTGAGGTTTTAGCATTTGCAGTTGGAAGTTTTATTCCCATGCCAGCATGCCGTGTATTCTCTATGTTTGCAGCATTGGCTGTtcttttggactttcttctgCAAGTTACTGCTTTTGTAGCTCTGATAGTCCTTGACTTTTTGCGAGTGGAGGAAAAACGAGTTGATTGTTTTCCCTGCATAAAAGTCTCCTCTATGCATGCTGACAATGATAAAGGTACTGACCAGAGAAAACCTGGTTTATTGGCTCGATATATGAAGGAGGTTCATGCTCCCATTCTTAGTATTTGGGGAGTCAAAATAGTTGTAATTGCTATTTTTGTGGCATTTGCATTGGCTAGCATTGCATTATGCACGAGAATTGAACCTGGTTTAGAGCAGAAAATTGTTCTTCCGCGAGACTCATATCTCCAGggatattttaataacatttCAGAATATCTCAGAATTGGACCacctttatattttgttgtgaAGAACTATAATTACAGCTCAGAATCAAGGCACACAAATCTGTTGTGTTCCATTAGCCAATGCAATTCAGACTCTCTTTTAAATGAGATAGCAAGAGCATCCCTAGTACCACAGTCAAGTTACATTGCCAAGCCAGCTGCTTCATGGCTTGATGATTTTCTAGTGTGGATATCTCCAGAAGCATTTGGATGCTGCAGAAAGTTCATAAATGGGGGTTATTGTCCTCCTGATGATCAGCCTCCTTGCTGTGCTCCTGATGAAGTTTCTTGTCATGCGGTTGGAGTATGTAAAGATTGCACTACGTGTTTCCATCACTCTGATCTCCATAATGATCGTCCATCTACAACACAATTTAGGGAGAAATTGCCATGGTTTCTTAATGCTCTACCTTCTGCTGACTGTGCAAAAGGTGGTCACGCGGCCTACACCAGCAGTGTTGAACTGAAAgGCTATGAGAATGGCATTATTCAAGCTTCATCATTCCGTACATACCATACTCCACTGAACAAGCAGATTGACTATGTTAATTCCATGAGGGCTGCTCGGGAATTTAGTTCAAGAATTTCTGATTCTTTGAAGATTGACATTTTGCCATATTCAgtgttttatatgttttttgaGCAATATCTTGATATCTGGAAGACCGCACTGATCAACCTTGCTATAGCAATTGGTGCAGTATTTATTGTGTGTTTGGTTATCACTTGTAGTTTATGGAGTTCGGCAATCATTTTGTTGGTATTGGCGATGATTGTCATTGATATTATGGGTGTGATGGCAATTCTGAACATCCAGTTGAACGCTGTCTCTGTTGTCAACCTCGTTATGTCAGTGGGCATTGCTGTTGAGTTTTGTGTGCATATGACTCATGCTTTCACTGTAACAAGTGGAGACAAAGAGCAACGTGCTAAGGAGGCTCTAGGTACAATGGGAGCTTCAGTTTTCAGTGGGATCACACTAACAAAGCTGGTTGGAGTTATTGTTCTTTGCTTTTCAAGGACAGAAGTTTTTGTGATTTATTACTTCCAAATGTACCTGGCTTTAGTACTTCTTGGTTTCTTGCACGGACTTGTATTCTTGCCGGTGGTGTTGAGCATCTTTGGTCCACCTTCAAGATGCGTCGTGCTCGTTGAGCAGACAGAAGATCAGTCATCAACTTCGTA 3878 0.3883 MDFRLVFITSILLLQVFLILSMVEAEDLTTRLLLTSNVEIQGRRHSEGYCAMYDICGKRSDGKVLNCPFGSPAVKPDDLLSSKIESLCPTITGNVCCTETQFGTLRSSVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVAQVGDNKTVDGIDFYVTDTFGQGLYESCKDVKFGTANTRAINFIGAGAQNFKEWFAFIGRKASPNLPGSPYPITFRPNPTKSSDMKPMNVSTYSCSDISLGCSCGDCPSSSECTKTAPPITHKRDSCSIRVGSLMVKCIDLILAVLYIILISVFLGWGLCHRMRERNPGSRTKSVPSVVTGGVLHSVNTQKDENLPMQMLEDAPQIRKGVQLSAVQGYMSNFYRIYGSYVARNPKMVLFSSLAIFLLLCLGLIRFKVETRPEKLWVGPGSKAAQEKQFFDSHLAPFYRIEQLILATIPDPVNGMSPKIVSEDNIKFLFEIQKKVDAIRANYSGLMVSLDDICMKPLGEECATQSVLQYFKMDPKFFDNYGGVEHLNYCFEHYSSADECMSAFKGPVDPSTVLGGFSGSNYSEASGFVITYPVNNAIDEGGNEIVKAVAWEKAYIQLVKDELLPMVRSKNLTLSFSSESSIEEELKRESTADAITILISYLVMFAYISLTLGDIPHPSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAVGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQVELPLEGRISNALVEVGPSITLASVAEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQVTAFVALIVLDFLRVEEKRVDCFPCIKVSSMHADNDKGTDQRKPGLLARYMKEVHAPILSIWGVKIVVIAIFVAFALASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEYLRIGPPLYFVVKNYNYSSESRHTNLLCSISQCNSDSLLNEIARASLVPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFINGGYCPPDDQPPCCAPDEVSCHAVGVCKDCTTCFHHSDLHNDRPSTTQFREKLPWFLNALPSADCAKGGHAAYTSSVELKGYENGIIQASSFRTYHTPLNKQIDYVNSMRAAREFSSRISDSLKIDILPYSVFYMFFEQYLDIWKTALINLAIAIGAVFIVCLVITCSLWSSAIILLVLAMIVIDIMGVMAILNIQLNAVSVVNLVMSVGIAVEFCVHMTHAFTVTSGDKEQRAKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVIYYFQMYLALVLLGFLHGLVFLPVVLSIFGPPSRCVVLVEQTEDQSSTS 1292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01835 1292 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 589 792 - -
Bva06g01835 1292 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 1081 1273 - -
Bva06g01835 1292 TIGRFAM 2A060601: Niemann-Pick C type protein family 50 1273 IPR004765 GO:0005319|GO:0016021
Bva06g01835 1292 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 6 1292 - -
Bva06g01835 1292 ProSiteProfiles Sterol-sensing domain (SSD) profile. 629 792 IPR000731 -
Bva06g01835 1292 Pfam Patched family 1055 1272 IPR003392 GO:0016021
Bva06g01835 1292 Pfam Patched family 557 907 IPR003392 GO:0016021
Bva06g01835 1292 Gene3D Multidrug efflux transporter AcrB transmembrane domain 583 799 - -
Bva06g01835 1292 Gene3D Multidrug efflux transporter AcrB transmembrane domain 1080 1277 - -
Bva06g01835 1292 Pfam Niemann-Pick C1 N terminus 48 277 IPR032190 -
Bva06g01835 1292 PANTHER PATCHED FAMILY PROTEIN 6 1292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01835 Bva-Chr6 12625453 12639394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01835 44 1292 Miscellaneous Gene Families AT1G42470 74.540 0.0 1881
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01835 K12385 - gmx:100784611 2117.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01835 06 12625453 12639394 Bva06g01835 06 12625453 12639394 ECH