Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01817 ATGGCGACCAAGGTCACGGTGACGGCCACGGCCACGGCTAGGGGCAGTCAAGCTCCCCCTCTGTCAACTGAAACCTCTGCTCCACCCAGACAACAACCTGTTTCGGTTAAGCCAGAGACCCCATTCTCCGATTCTAGAGATGTTTCTCGTGCTGCTACTGCCTCCACCACTCTCCGTTTGCTCGAGACTCCGCCTTCCTCGGATGCTAGTGTAATCCTTGTCCCCAGCCACTCCAGATGGTTTTCATGGAATGATATACATGAATGTGAGGTCCGCTATTTGCCAGAATTTTTTGATTCCGGTTCGCCTTCTAAGAACCCTAGGGTTTACAAGTACTACAGGAATTCAATTGTGAAGCAATTCAGAGATAATCCTTCCAGAAAGGTTACCTTCACGGATGTGAGGAAAACGCTTGTGGGTGATGTGGGTTCAATCCGTAGGGTCTTTGATTTCCTGGAGGCATGGGGTTTGATCAATTACCAACCAGCCTCAGCGTTGAGCAAACCCTTCAAGTGGGAAGACAAGGATAGCAAACCTGGTGGGCCCACCGAATCTGCAAGTAATTCCATTGAATCATCAGCTCCAATCCGAGACACTTCCAAGAGAATATGCAGTGGTTGCAAAGCGGTCTGTACCATTGCTTGCTTTACTTGTGACAAGTATGACTTGACTCTCTGTGCAAGATGTTATGTTCGTGGTAATTACCGAGTTGGCGTAAACTCTTCAGATTTTAGGCGAGTGGAGATAAGTGAGGAGACAAAGACAAATTGGACAGATAAGGAAACTTTGCATCTTGTAGAAGCCATTATGCATTATGGTGATGACTGGAGGAGGGTTGCTCAGCATGTTGGTGGTCGGAGTGAGAAGGAATGTGTTGCTCATTTTATTAAGCTTCCTTTTGGGGAGGAATTACTCCAACATCAAGATTCTGTTGCTAGCCATGAAAGAGGTAGTCAATCAGAGGAATATGCTGAACAATACAGATTGGAAAATATTGGCTCAGGGGAGCCAAGTAAAAGAATGCGTCTAACACCTCTTGCAGATGCAAGCAACCCTATCATGGCTCAGGCTGCTTTCCTGTCCGCTTTGGCAGGGGTGGAGGTTGCACAAGCCGCTGCTCAAGCTGCTGTGACAGCTCTTCCCAAGGTTTACAATGAAACTAGAATAAACTATGGATCACATTCAAGTAATACTATGTTGCAAGATGCTGACATTACATCTAACGGCGTCACTACTTCCGATAAATTTGAAGGAGCTTGTTTGAATGCAAATGCAAAGATTGAGAAGGAAGTATCAGAGGTGGAAAAGGCAATTTCTGGAATTATAGAAGTTCAGATGAAAAAGATCCAAGACAAGCTTGTTCATTTTGGCGATCTAGACCTGCTGATGTATAAAGAATGGCAGCAGTTGGAGCAAATGAGTAATATGTTTTTCGTTGACCAGCTTACTCTTGTATTTCAAAGACGATCGGCAACAAAATCTGGAGAATGCATAGAGGAGAATGTAAAAAAAGATTG 1517 0.4496 MATKVTVTATATARGSQAPPLSTETSAPPRQQPVSVKPETPFSDSRDVSRAATASTTLRLLETPPSSDASVILVPSHSRWFSWNDIHECEVRYLPEFFDSGSPSKNPRVYKYYRNSIVKQFRDNPSRKVTFTDVRKTLVGDVGSIRRVFDFLEAWGLINYQPASALSKPFKWEDKDSKPGGPTESASNSIESSAPIRDTSKRICSGCKAVCTIACFTCDKYDLTLCARCYVRGNYRVGVNSSDFRRVEISEETKTNWTDKETLHLVEAIMHYGDDWRRVAQHVGGRSEKECVAHFIKLPFGEELLQHQDSVASHERGSQSEEYAEQYRLENIGSGEPSKRMRLTPLADASNPIMAQAAFLSALAGVEVAQAAAQAAVTALPKVYNETRINYGSHSSNTMLQDADITSNGVTTSDKFEGACLNANAKIEKEVSEVEKAISGIIEVQMKKIQDKLVHFGDLDLLMYKEWQQLEQMSNMFFVDQLTLVFQRRSATKSGECIEENVKKD 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01817 505 CDD SANT 256 298 IPR001005 -
Bva06g01817 505 PANTHER SWI/SNF COMPLEX-RELATED 13 500 - -
Bva06g01817 505 Gene3D - 252 302 - -
Bva06g01817 505 ProSiteProfiles SANT domain profile. 252 303 IPR017884 -
Bva06g01817 505 MobiDBLite consensus disorder prediction 171 194 - -
Bva06g01817 505 Pfam SWIRM-associated region 1 422 492 IPR032451 -
Bva06g01817 505 ProSiteProfiles SWIRM domain profile. 72 169 IPR007526 GO:0005515
Bva06g01817 505 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 254 302 IPR017930 -
Bva06g01817 505 Pfam Myb-like DNA-binding domain 255 298 IPR001005 -
Bva06g01817 505 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3B 13 500 - -
Bva06g01817 505 MobiDBLite consensus disorder prediction 1 50 - -
Bva06g01817 505 ProSiteProfiles Myb-like domain profile. 249 299 IPR001005 -
Bva06g01817 505 Pfam SWIRM domain 75 160 IPR007526 GO:0005515
Bva06g01817 505 SUPERFAMILY Homeodomain-like 253 301 IPR009057 -
Bva06g01817 505 Gene3D - 78 164 IPR036388 -
Bva06g01817 505 SUPERFAMILY Homeodomain-like 69 170 IPR009057 -
Bva06g01817 505 MobiDBLite consensus disorder prediction 1 39 - -
Bva06g01817 505 SMART sant 253 301 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01817 Bva-Chr6 12552077 12555369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01817 179 295 EF-hand Containing Proteins AT3G07740 28.030 9.54e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01817 K11649 - gmx:100779777 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01817 06 12552077 12555369 Bva06g01817 06 12552077 12555369 ECH