Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01679 ATGCCTTCTGAAGTAATGGACTTAAAATGTTTGTCCTCATCTTCATACTTCTCTAAAGATATTTGCTCTTCTAAAGAGAGGCAGGTTGGATTGTGGGAAGTAGAtaaacatcccaaattttatgCCACGGAGAAATCTATTGCATCAGCATTTATGGAAAGACTTATGCCAGTTGAATATCAGAACGGAAATTACTTTGACCATCCTCAGTCTTTCCTACCTCAAGATCAGAGACCAAATCATGGGGTAAATGGACTTGCACTAGGCACAGATAACACATCTAGTCATTCCTTGACCTCACTAAGTCATGTGGATTCTGATCAAGGAACAAGATGTAGTTTGAACACCCAACCTACAACCAAATTTTGGGAAAGCAACAAAGTTGATCTCAATGGCACTCAGTATGAAAGTAGCCTTTTCTCAAGTTCTCTCTCAGAATTGTTTAGCAGAAAGTTGAGATTATCTGCAAATAATGATCTATATGGTCATTCAGTTGATACTGTTTCATACCAACATGAGGAAGAGGAACTTTCTGAGTCCCTTGAAGAACTTGAGGCTAACACTATTGGAAATCTGCTCCCTAATGATGATGATTTGCTTTCTGGATTGACGGATGGATTTGATCACCTCATCCAAGACGATAGTATGGATGACATAGAGGAACTAGACCTTTTTAGTAGTGTTGGAGGGATGGATTTGGGAGATGATACTTCATTTTCTGGACAAAAGAATTCTGAATTTGCTGGAGCAGCTAATCACTTTTTGAGCGTTATGGAGATATTCACACTCTTTATACAGCGTGCAATTATTATCTCATATTATGATATTAGAGCTGCCCAGAATGCTATCCGAGCACTCCAGAATGGACCATTAAGGCGCATGAAACTTGACATTCATTATTCAATTCCGAAGGACAATCCTTCAGAGAAAGATATCAATGAGGGCACGCTTATGGTGTTTAGTCTTGATTCCCCTGTTTCAAATGACGAACTTTGCCACATATTCGGTGTCTATGGAGAAATCAAGGAGATCCGTGAAGTCCCACAAAGGACACATCAAAAgttcattgaattttttgatgTTAGAGCAGCAGAGGCTGCTCTTGGTGCCTTAAACGGAAGTGACATTGCGGGGAAGAGGATAAAGGTTACGCCAGGCCGATCTGGTGCTGCAAAACAGTGTATGGCGCAACAGATTCATCCAGGATTAGAGCAGGAAAAATATAACCTTTGTATGAATCAGAGCAGCCCCCCTCTTAAGTCCCGTACCAGCTTCCCTGGTCTAGGTTTGCTTGGGATAATTACATCTGGTGCTATGGATGACGGAAGAGTTCTGGGTGTTGAGCCTGTTACGCGAGCTTCATCCTTGCAAACTACATTTACTCAGAGGATCCCTTCAAGTCTTCCTAACACCTTACCCTCTCTAGTTAGAGTTAAACCGGTTGGCAACCAGCATGGAATAATAGCTGAATCTGATTCTCAAGGGAAATTAAACGATATTCGACCCATGTCAACTTTTCATCCTCATTCTCTCCTCGAACATCATGATGGTTTATCTAATGGTGCTCACTTCAATTCTCCTGATGTGGCTGCAAACAACCTCAAAACACAGGAAAGAATGGATAACATCCAATTTTGTCAAGTAAACTCCAATGGGAACTCTACAGGACTCAATGAACACGTTTTTAAATGTGCTGGTAGTGGGAGCTATCCTCTTCTTGGCGAGAATTACAAATGGAGCAATTCTTATCATTCTCCATCTCTCCAGCCTTCTAGAATGATGTGGCCAAATTCACCATCTTATGCCAGTGGAATTTGTGCAGCCCATCCCTTGCCGAGATTGCATGGACCTCTTAGGCCACCATCTCATGCGATGGGCACTGTTTTACCAATAAATGACCACCACGTGGGATCAGCCTCTGCAGTTAACCCTCCTTTTTGGGACAAACAACATATCTATGCTGGAAAATCCCCTGAAACTTCTGGTTTCCTTCCTGGCTCGCTTGAGAATGTGCAATTTTCCAATAATACACCCCACTCTGTGGATTTTGTTTCTCATAATATGCTTCCTCATGTTGGTGGAAAACCTGTTGACTTTCCAATTCCTCTGAAGAACCAAGGATGCATGATGTTTCCTGGTAGAAACCACATGGTTCCGATgattaattcatttgatactCACAGTGACCGTGCTAGAAACCGTAGAAATGAAGGTGGGTCAAACCAAGCTGACAACAAGAAACAGTATGAACTTGATATTGACCGTATAACGAGGGGAGAAGATAACCGAACCACACTCATGATAAAGAACATTCCTAACAAGTATACTTCCAAGATGCTATTGGCTGCGATTGATGAGCGTCATAGGGGAACTTACGATTTTATTTATCTACCAATTGATTTCAAGAATAAATGCAACGTGGGATATGCATTCATCAACATGACTAGTCCTAGCTTGATTATACCGTTCTACCAGACTTTTAACGGGAAGAAGTGGGAGAAATTCAACAGTGAGAAGGTGGCATCACTAGCGTATGGTCGTATACAAGGGAAAGTAGCACTTATTGCTCATTTCGAAAATTCAAGCTTGATGAATGAGGACAAGCGCTGCAGGCCTATCCTTTTCAACACCGAAGGTCCTAATGCAGGTGATCAGGTCCCTTTCCCAATGGGTGCCAACGTCCGCAACAGACCTGCAAGAGGGAGAAGCAATACCCTAGAGGATAACCCACGAGGTAGTCCACCTACTTCAGGAATTAATAGTGAGATCTTATTCTCATCTTA 2783 0.4139 MPSEVMDLKCLSSSSYFSKDICSSKERQVGLWEVDKHPKFYATEKSIASAFMERLMPVEYQNGNYFDHPQSFLPQDQRPNHGVNGLALGTDNTSSHSLTSLSHVDSDQGTRCSLNTQPTTKFWESNKVDLNGTQYESSLFSSSLSELFSRKLRLSANNDLYGHSVDTVSYQHEEEELSESLEELEANTIGNLLPNDDDLLSGLTDGFDHLIQDDSMDDIEELDLFSSVGGMDLGDDTSFSGQKNSEFAGAANHFLSVMEIFTLFIQRAIIISYYDIRAAQNAIRALQNGPLRRMKLDIHYSIPKDNPSEKDINEGTLMVFSLDSPVSNDELCHIFGVYGEIKEIREVPQRTHQKFIEFFDVRAAEAALGALNGSDIAGKRIKVTPGRSGAAKQCMAQQIHPGLEQEKYNLCMNQSSPPLKSRTSFPGLGLLGIITSGAMDDGRVLGVEPVTRASSLQTTFTQRIPSSLPNTLPSLVRVKPVGNQHGIIAESDSQGKLNDIRPMSTFHPHSLLEHHDGLSNGAHFNSPDVAANNLKTQERMDNIQFCQVNSNGNSTGLNEHVFKCAGSGSYPLLGENYKWSNSYHSPSLQPSRMMWPNSPSYASGICAAHPLPRLHGPLRPPSHAMGTVLPINDHHVGSASAVNPPFWDKQHIYAGKSPETSGFLPGSLENVQFSNNTPHSVDFVSHNMLPHVGGKPVDFPIPLKNQGCMMFPGRNHMVPMINSFDTHSDRARNRRNEGGSNQADNKKQYELDIDRITRGEDNRTTLMIKNIPNKYTSKMLLAAIDERHRGTYDFIYLPIDFKNKCNVGYAFINMTSPSLIIPFYQTFNGKKWEKFNSEKVASLAYGRIQGKVALIAHFENSSLMNEDKRCRPILFNTEGPNAGDQVPFPMGANVRNRPARGRSNTLEDNPRGSPPTSGINSEILFSS 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01679 927 Gene3D - 312 402 IPR012677 -
Bva06g01679 927 Coils Coil 167 187 - -
Bva06g01679 927 Pfam RNA recognition motif 2 763 858 IPR007201 -
Bva06g01679 927 PANTHER PROTEIN MEI2-LIKE 4 268 918 - -
Bva06g01679 927 MobiDBLite consensus disorder prediction 894 927 - -
Bva06g01679 927 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 382 IPR000504 GO:0003723
Bva06g01679 927 PANTHER RNA RECOGNITION MOTIF-CONTAINING 268 918 - -
Bva06g01679 927 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 243 - -
Bva06g01679 927 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 388 IPR000504 GO:0003723
Bva06g01679 927 SUPERFAMILY RNA-binding domain, RBD 303 398 IPR035979 GO:0003676
Bva06g01679 927 SUPERFAMILY RNA-binding domain, RBD 765 848 IPR035979 GO:0003676
Bva06g01679 927 MobiDBLite consensus disorder prediction 906 927 - -
Bva06g01679 927 SMART rrm1_1 316 384 IPR000504 GO:0003723
Bva06g01679 927 SMART rrm1_1 765 841 IPR000504 GO:0003723
Bva06g01679 927 PANTHER PROTEIN MEI2-LIKE 4 2 243 - -
Bva06g01679 927 CDD RRM3_MEI2_like 766 851 IPR034454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01679 Bva-Chr6 11785346 11791556 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01679 - - qsu:111984371 1060.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01679 06 11785346 11791556 Bva06g01679 06 11785346 11791556 ECH