LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva06g01569	ATGGCAATCCCTTTGTATCTGTGGGTTTCACTATGCGTGGGAACTCTTCTACTCACGGAATCCAAGTATATAAGGTACAATACATCGTCGAGCATTGTTCCTGGGAAGCTCAACGTTCATCTGGTACCTCACACTCACGATGATGTTGGATGGTTGAAAACCGTTGACCAGTACTATGTTGGTTCAAACAATTCCATTCAGGGAGCTTGCGTTCAAAATGTGCTGGATTCACTGGTACCGGCATTGTTGGCCGACAAGAATCGCAGGTTCATATATGTTGAACAGGCATTTTTCCAGCGTTGGTGGAGAGAACAGAGTGAAGCAGTCCAAAACATAGTCAAGCAGCTAGTCAACTCTGGTCAACTGGAGTTCATAAATGGGGGTATGTGTATGCACGACGAGGCTACTACACATTACATTGACATGATAGATCAGACAACTCTGGGACATAAATTCATCAAAGAAGAATTTGGTGTAACTCCAAGAATAGGTTGGCAAATTGACCCATTTGGACATTCTGCTGTGCAGGCTTACTTGTTGGGAGCAGAGGTGGGATTTGATTCTCTGTTTTTTGCACGGATTGACTACCAAGACAGAGCTAAGAGGAAAGATGATAAAACGCTTGAAGTTGTGTGGCAGGGCTCCAAGACTCTTGGTTCATCTGCGCAAATCTTTTCTGGTGCATTCCCTGAGAATTATGAACCTCCTAGTAATTTTTACTATGAAGTAAACGATGACTCTCCTATTGTCCAGGATGATATCAATTTGTTTGACTATAATGTCCCTGAACGCGTAAACGAGTTCGTTGCAGCCGCAATGTTGCAGGCTAATATTACTCGCACGAATCATATAATGTGGACAATGGGGACAGATTTCAAGTACCAATATGCTCATACTTGGTTTCGGCAAATGGACAAATTTATTCACTATGTCAATCAAGATGGCAGAGTCCATGCCCTGTACTCGACCCCATCAATGTACACAGATGCAAAACATGCAACAAAGGAAGCCTGGCCAATCAAGACCAATGACTTCTTCCCGTATGCTGATCGTGTAAATGCCTATTGGACGGGGTATTTTACGAGTAGGCCAGCCTTGAAATATTATGTCAGAATGATGAGTGGATACTATTTGGCAGCCAGGCAGTTGGAATATTTTAAAGGAAAGACTGCCTCGGGTCCTAAAACTGACTCTTTGGCTGATGCTTTGGCGATTGCTCAACACCATGATGCAGTTTCTGGTACAGAGAAACAGCATGTGGCTAATGATTATGCAAAACGACTTGCAATAGGTTACACAGAGGCTGAGGAGCTAGTTGCAGCATCACTTGCCTGCATGACAGAAGGAAAATCCAAAACTGGTTGTACGAGTTCAAATACTAAATTTCAACAGTGTCCACTTTTGAACATAAGTTACTGTCCTGCATCAGAAGTTGATTTTTCAAACGGTAAAAACCTGGTGGTTGTTGTTTACAATCCCCTTGGATGGAAAAGAGAGGACGTTATAAGAATTCCTGTTATCAACAAAAATGTTGTTGTCCGGGATTCAAGTGGAAAAGAAATCCAGTCTCAGCTGCTACCATTAGTTAAGGCTTCTCTGGGTTTAAGAAGCTACAACACCAAGGCATACCTGGGAGTATCTCCAACTGAAAATCCGAAATATTGGCTTGCTTTTTCAGCAACTGTTCCCCCGCTTGGTTTTAGCACATACTACATTTCAGGAGATAAACAAGCAGCTAGTTTATCAGATGAGCAAACTGTAGATAAGTCAGGGAATCAGAGTAATACAATTGAAGCAGGCCCAGGAAACTTGAAACTAATTTATTCTGGAAAGACAGGGAAGCTTACCCACTATATCAATAGCAAAAGCAAGGTGAAAGAATCTGTAGACCAAACTTACAGTTTTTACTCTGGATATGGAAATGATGGAACTAAGACTGCTCAGGCCTCAGGAGCATATGTTTTTCGCCCAAACGGTACATATCCCATCAAACCTCATCATAAGtttcCTCTCACAGTTTTTCGAGGCCCACTTGTTCATGAGGTGCATCAGAAGATCAATTCATGGATATACCAGACTACCAGACTGTACACTGAGAAAGAGTATGCTGAAGTTGAGTTTATtGTTGGACCCATTCCCGTGGATGATagaattggaaaagaaattgcaaCTCAGATTAAAACAAATCTGGCTAGCAAAAAAGCCTTCTACACCGATTCTAATGGACGTGATTTTATCAAACGGATTCGAGACTATCGAGAAGACTGGAACTTGGAAGTGAATCAACCTGTTGCTGGAAATTATTATCCAATCAATCTTGGCATTTATCTGAAAGATAAACACAAAGAGTTGTCAGTATTAGTAGATCGATCTGTGGGGGGATCCAGCATTGTGGATGGGCAAGTTGAGCTAATGGTTCATAGgagGTTACTTGCGGATGATTCCAGAGGTGTTGGAGAGGCACTAAATGAAACAGTTTGCATTCACGACAATTGCACAACCGGCTTAGCTGTACTGGGGAAGTACTATTTCAGAATTGACCCTGTAGGAGAGGGTGCTAAATGGCGTCGATCATTTGGTCAGCAGATTTACTCACCCTTTCTTTTAGCCTTCACACAGCAGCagAGTGGAGATTATTGGGCAAATTCCCATGTGACAACCTTTTCGGGAATGGATACTTCCTACAGCTTACCAGATAACGTTGCAATAATAACACTCCAGGAGCTGGATGATGGAAAAATTCTCCTTCGACTGGCACACTTGTATGagATTGGGGAGGACAAGGATCTTTCAGTTACGGCAAGTGTAGAACTGAAGAAGGTGTTCCGGAATAAAAAGATAAATAAGTTGACTGAGACAAGTTTATCAGCCAACCAAGAAAGAGCAGAAATGGAGAACAAGAGATTAGTGTGGAAAGTGGAAGGGTTAGATCAAGGACCCAAGGTGGCCAGGGGTAAACCAGTAGATCCACAAAAGCTAGTTGTAGACCTTGCTCCCATGGAAATACGGACCTTCATTATCAGTTTAGTCAGTTA	3035	0.4191	MAIPLYLWVSLCVGTLLLTESKYIRYNTSSSIVPGKLNVHLVPHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSLVPALLADKNRRFIYVEQAFFQRWWREQSEAVQNIVKQLVNSGQLEFINGGMCMHDEATTHYIDMIDQTTLGHKFIKEEFGVTPRIGWQIDPFGHSAVQAYLLGAEVGFDSLFFARIDYQDRAKRKDDKTLEVVWQGSKTLGSSAQIFSGAFPENYEPPSNFYYEVNDDSPIVQDDINLFDYNVPERVNEFVAAAMLQANITRTNHIMWTMGTDFKYQYAHTWFRQMDKFIHYVNQDGRVHALYSTPSMYTDAKHATKEAWPIKTNDFFPYADRVNAYWTGYFTSRPALKYYVRMMSGYYLAARQLEYFKGKTASGPKTDSLADALAIAQHHDAVSGTEKQHVANDYAKRLAIGYTEAEELVAASLACMTEGKSKTGCTSSNTKFQQCPLLNISYCPASEVDFSNGKNLVVVVYNPLGWKREDVIRIPVINKNVVVRDSSGKEIQSQLLPLVKASLGLRSYNTKAYLGVSPTENPKYWLAFSATVPPLGFSTYYISGDKQAASLSDEQTVDKSGNQSNTIEAGPGNLKLIYSGKTGKLTHYINSKSKVKESVDQTYSFYSGYGNDGTKTAQASGAYVFRPNGTYPIKPHHKFPLTVFRGPLVHEVHQKINSWIYQTTRLYTEKEYAEVEFIVGPIPVDDRIGKEIATQIKTNLASKKAFYTDSNGRDFIKRIRDYREDWNLEVNQPVAGNYYPINLGIYLKDKHKELSVLVDRSVGGSSIVDGQVELMVHRRLLADDSRGVGEALNETVCIHDNCTTGLAVLGKYYFRIDPVGEGAKWRRSFGQQIYSPFLLAFTQQQSGDYWANSHVTTFSGMDTSYSLPDNVAIITLQELDDGKILLRLAHLYEIGEDKDLSVTASVELKKVFRNKKINKLTETSLSANQERAEMENKRLVWKVEGLDQGPKVARGKPVDPQKLVVDLAPMEIRTFIISLVS	1011

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva06g01569	1011	Pfam	Glycosyl hydrolases family 38 C-terminal domain	602	816	IPR011682	GO:0004559\|GO:0006013
	Bva06g01569	1011	PANTHER	ALPHA-MANNOSIDASE	16	1009	-	-
	Bva06g01569	1011	SUPERFAMILY	Galactose mutarotase-like	458	1008	IPR011013	GO:0003824\|GO:0005975\|GO:0030246
	Bva06g01569	1011	Gene3D	-	600	865	-	-
	Bva06g01569	1011	PANTHER	ALPHA-MANNOSIDASE	16	1009	-	-
	Bva06g01569	1011	Pfam	Glycosyl hydrolases family 38 C-terminal beta sandwich domain	900	1006	IPR041147	-
	Bva06g01569	1011	Coils	Coil	947	967	-	-
	Bva06g01569	1011	Gene3D	Glycoside hydrolase 38, N terminal domain	37	317	IPR027291	-
	Bva06g01569	1011	Pfam	Glycosyl hydrolases family 38 N-terminal domain	38	349	IPR000602	GO:0004559\|GO:0006013
	Bva06g01569	1011	Gene3D	-	885	1010	-	-
	Bva06g01569	1011	Gene3D	Glycoside hydrolase family 38, central domain	397	453	IPR037094	GO:0004559\|GO:0006013
	Bva06g01569	1011	CDD	GH38N_AMII_LAM_like	37	313	-	-
	Bva06g01569	1011	Gene3D	-	474	599	IPR013780	-
	Bva06g01569	1011	Pfam	Alpha mannosidase middle domain	354	445	IPR015341	GO:0004559\|GO:0006013
	Bva06g01569	1011	Gene3D	Glycoside hydrolase family 38, central domain	318	396	IPR037094	GO:0004559\|GO:0006013
	Bva06g01569	1011	SUPERFAMILY	Families 57/38 glycoside transferase middle domain	354	453	IPR028995	-
	Bva06g01569	1011	SUPERFAMILY	Glycoside hydrolase/deacetylase	26	350	IPR011330	GO:0005975
	Bva06g01569	1011	SMART	Alpha_mann_mid_2	354	428	IPR015341	GO:0004559\|GO:0006013

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva06g01569	Bva-Chr6	11221887	11228810	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva06g01569	8	923	Glycoside Hydrolase	AT5G13980	70.065	0.0	1352

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva06g01569	K01191		-	gmx:100798150	1700.64

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva06g01569	06	11221887	11228810	Bva06g01569	06	11221887	11228810	ECH