Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01562 ATGGCTAGGGTTTTGGCTCAGTCAATTAATGTGCCTTGTCTAGTGGCTAGCCAAAGGCATAATCAAAATAGGGGATCAGGAAGGGTCAGAAGACCAGTCAGAATGATGTCTTCCTTAAGTGTTCCTGGATTACGAATAAATGGTTTCTCAGGACTACGTGCTTTGAATCTTTTGGACACTAAGCTTAGACCTAGGCAAGATTTCTATTCTAAGGTTTCTATTGCAACTTCTTCACGACGATCAAGGGCCAGTAGAAGTGCGCCTAAGGCCATGTTTGAGCGTTTCACTGAGAAAGCAATCAAAGTGATTATGCTGGCACAGGAAGAAGCAAGAAGACTTGGTCACAATTTTGTTGGAACAGAACAGATTCTGTTGGGTCTTATTGGTGAAGGCACTGGTATTGCTGCTAAGGTTCTAAAGTCTATGGGAATCAACCTTAAAGATGCGCGTGTGGAAGTGGAGAAGATTATTGGAAGAGGTAGTGGATTTGTTGCTGTTGAGATTCCATTTACTCCCCGTGCAAAGCGGGTTTTGGAACTCTCATTGGAGGAAGCTCGCCAACTTGGTCATAATTATATCGGATCTGAGCACTTGCTATTGGGTCTCCTACGTGAGGGTGAAGGTGTAGCAGCACGTGTTCTTGAAAATCTTGGTGCTGATCCAACTAATATACGCACACAGGTTATTCGAATGGTTGGTGAGAGTGCAGACAGTGTCACTGCTACTGTCGGCCCTGGAAGCAGTGGCAATAAGATGCCAACTTTGGAGGAGTATGGTACCAATTTGACCAAGCTAGCAGAGGAGGGGAAACTGGATCCAGTTGTGGGAAGGCAGCCGCAAATAGAACGTGTTACTCAAATTTTAGGTCGTCGAACCAAAAACAACCCTTGTCTTATTGGAGAACCTGGTGTTGGAAAGACTGCTATTGCTGAAGGTCTTGCTCAGCGGATAGCAAATGGTGACGTACCTGAAACCATAGAAGGGAAGAAGGTTATAACCCTGGATATGGGTCTACTTGTTGCTGGAACAAAATATCGTGGAGAGTTTGAGGAGAGATTAAAGAAACTAATGGaggaaattaaacaaagtgaTGagataatactttttattgatgaaGTGCACACTCTAATTGGAGCAGGAGCTGCTGAAGGGGCAATTGACGCTGCAAACATACTAAAACCAGCTCTTGCAAGAGGTGAACTGCAGtGTATAGGAGCAACAACACTGGATGAGTACAGAAAACACATTGAAAAAGATCCAGCTTTAGAAAGGCGATTCCAGCCAGTCAAAGTGCCAGAGCCTAGTGTGGATGAAACTATTCAAATTCTGAAAGGACTTAGAGAACGTTATGAGATTCACCACAAGCTCCGTTATACTGATGAAGCCCTTATAGCTGCTGCAAAGCTCTCATACCAGTATATCAGTGATCGATTTCTGCCTGATAAAGCTATAGACTTGATTGATGAAGCTGGTTCCCGGGTCAGACTTCGTCATGCGCAGTTGCCTGAAGAAGCAAGAGAGCTGGACAAGGAAGTCAGACAGATtgtgaaggagaaagaagaagcagtTCGCAACCAAGACTTCGAAAAGGCTGGCGAGCTACGGGATAAAGAAATGGATCTTAAGGCACAGATATCAGCGCTTGTAGAGAAAGGCAAGGAGATGAGCAAGGCAGAGAGCGAGGCAGGAGACAGTGGTCCCGGAGACAGTGGCCCTGTTGTGACGGAGGTTGATATTCAACATATCGTCTGCTCCTGGACTGGTATTCCTGTCGAGAAAGTGTCTACAGATGAATCTGATCGCCTTCTCAAGATGGAAGAAACCCTCCACAAGCGAGTCATTGGTCAAGATGAAGCAGTAAAAGCTATCAGTCGGGCTATCCGCCGAGCTCGGGTAGGATTGAAGAACCCAAATCGTCCCATTGCCAGCTTTATCTTCTCTGGTCCAACTGGTGTGGGGAAGTCTGAGCTGGCAAAAGCATTGGCGGCATACTATTTTGGTTCTGAAGAAGCCATGATCCGGCTTGACATGAGTGAGTTCATGGAGAGGCACACTGTGTCTAAGCTCATTGGCTCACCACCTGGATATGTCGGTTACACTGAGGGTGGTCAGCTGACTGAGGCAGTTCGGCGTCGGCCCTACACTGTTGTACTCTTTGATGAGATTGAGAAAGCACATCCTGATGTGTTCAACATGATGCTTCAAATCCTTGAAGATGGAAGGCTAACAGATAGTAAGGGCAGAACTGTGGACTTCAAGAACACACTTCTTATAATGACATCAAATGTTGGGAGCAGTGTGATTGAGAAAGGAGGTCGCCGAATAGGATTTGACCTTGATTATGACGAGAAGGATAGCAGTTATAATCGAATCAAGAGCTTGGTGACTGAGGAACTGAAACAGTATTTTAGGCCAGAGTTTTTGAATAGGTTGGATGAGATGATTGTTTTCAGACAACTCACGAAGCTAGAGGTGAAGGAGATAGCTGATATAATGTTGAAGGAGGTCTTCGAGAGACTGAAAGCCAAAGAAATTGAACTTCAAGTGACGGAGAGATTCAGGGATAGAGTGGTCGAGGAAGGTTACAACCCAAGTTATGGAGCTAGGCCCTTGAGAAGAGCCATAATGAGACTGTTGGAAGACAGCATGGCTGAGAAGATGCTCGCAGGAGAGATCAAAGAAGGTGACTCTGTCATAGTGGATGTCGATTCTGATGGTAATGTGATTGTGCTTAATGGTAGCAGTGGTGCCCCAGAGTCATTGCCGGAGGCACTCCCTGTATA 2783 0.4474 MARVLAQSINVPCLVASQRHNQNRGSGRVRRPVRMMSSLSVPGLRINGFSGLRALNLLDTKLRPRQDFYSKVSIATSSRRSRASRSAPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGESADSVTATVGPGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALIAAAKLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELDKEVRQIVKEKEEAVRNQDFEKAGELRDKEMDLKAQISALVEKGKEMSKAESEAGDSGPGDSGPVVTEVDIQHIVCSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKAKEIELQVTERFRDRVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAGEIKEGDSVIVDVDSDGNVIVLNGSSGAPESLPEALPV 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01562 927 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 75 927 - -
Bva06g01562 927 Gene3D - 592 818 IPR027417 -
Bva06g01562 927 MobiDBLite consensus disorder prediction 552 573 - -
Bva06g01562 927 Coils Coil 346 366 - -
Bva06g01562 927 Gene3D - 437 586 - -
Bva06g01562 927 Gene3D UVR domain 501 559 - -
Bva06g01562 927 SUPERFAMILY Double Clp-N motif 93 234 IPR036628 -
Bva06g01562 927 Coils Coil 505 525 - -
Bva06g01562 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 589 907 IPR027417 -
Bva06g01562 927 SMART ClpB_D2_small_2 820 910 IPR019489 -
Bva06g01562 927 CDD AAA 614 762 - -
Bva06g01562 927 Pfam C-terminal, D2-small domain, of ClpB protein 820 900 IPR019489 -
Bva06g01562 927 ProSiteProfiles Clp repeat (R) domain profile. 92 234 IPR004176 -
Bva06g01562 927 PANTHER ATP-DEPENDENT CLP PROTEASE 75 927 - -
Bva06g01562 927 CDD AAA 275 427 - -
Bva06g01562 927 ProSitePatterns Chaperonins clpA/B signature 1. 387 399 IPR018368 GO:0005524
Bva06g01562 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 252 529 IPR027417 -
Bva06g01562 927 Pfam AAA domain (Cdc48 subfamily) 639 813 IPR003959 GO:0005524|GO:0016887
Bva06g01562 927 Gene3D - 820 917 - -
Bva06g01562 927 ProSiteProfiles UVR domain profile. 509 544 IPR001943 GO:0005515
Bva06g01562 927 Pfam AAA lid domain 435 537 IPR041546 -
Bva06g01562 927 Gene3D - 91 240 IPR036628 -
Bva06g01562 927 Gene3D - 245 435 IPR027417 -
Bva06g01562 927 Pfam ATPase family associated with various cellular activities (AAA) 297 413 IPR003959 GO:0005524|GO:0016887
Bva06g01562 927 Pfam Clp amino terminal domain, pathogenicity island component 182 233 IPR004176 -
Bva06g01562 927 Pfam Clp amino terminal domain, pathogenicity island component 106 158 IPR004176 -
Bva06g01562 927 ProSitePatterns Chaperonins clpA/B signature 2. 674 692 IPR028299 -
Bva06g01562 927 SMART AAA_5 640 821 IPR003593 -
Bva06g01562 927 SMART AAA_5 292 432 IPR003593 -
Bva06g01562 927 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 644 662 IPR001270 GO:0005524
Bva06g01562 927 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 751 765 IPR001270 GO:0005524
Bva06g01562 927 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 718 736 IPR001270 GO:0005524
Bva06g01562 927 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 689 707 IPR001270 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01562 Bva-Chr6 11172070 11178259 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01562 K03696 - gmx:100804035 1647.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01562 06 11172070 11178259 Bva05g00196 05 971189 977415 ECH
Bva06g01562 06 11172070 11178259 Bva06g01562 06 11172070 11178259 ECH