Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01537 atgaagaggaagagagaagaggagGACATGGATATCGTGTGGCAAACTCCGGCAAATCCCCCAGAGCGACAAGATTACATTTTTCGAAACGGGATACGATATGTCAGACCGTACTACTTCGAATTTATCGCTCATGTTAAGAATCGTTGGGCAGGAAAAACCATTGTACATATGTTCGCTGATGAGTTTAAAGGCCGACCTTATGAATATTATGTTAGTGCGGTGAAATGTGGAAGAATACAAGTTGATGGTGAGATGGTTCCAGTCTCATACATAGTAAAATCATCCCAAAAGATAAGCCATTTCTTACACAGGCATGAACCACCTGTGATGGCTTGTGATGTTTCAGTTCTTCAAAAAGAACCAGATGTGGTTACTGTTTGTAAACCGGCGTCCATCCCGGTGCATCCATGCGGTCAGTATCGTAAGAATACTGTTGTTGGCATCCTTCAAGCAGAGTATGGATTGGCTCCTCTATTTCCAGTTCATCGACTGGATCGTCTCGTATCAGGACTTCTCATTTTGGCCAGAAATGCTCCAAAAGCTGACATCTTTAGGCAACAgATTGAAGCTGGCTTAGTCAATAAACAGTATATTGCAAAGGTAGTTGGAGAATTTCCTGAGGATGAGCAAGTTGCTGATGCCAATATAAACTATGATGCTCGAGAAGGAAGGAGCGTAGCAGAGATCAGAGACTCTGCAAAGGGGAAGGCTGCCACTACAAAATTTCGTCGGATTAGTTCCAATGGTGCACATAGTATTGTTTTGTGTGAACCAATCACAGGACGAACTCATCAAATACGCGTCCATTTACAGTATTTGGGGCATCCAATAGCCAATGACATGCTATATCTCTCAGAGCAAACGGTTGATCGATCTAGTCAAGGAACTAGTGCTGACAGAGCTGCTTTCATGTCGAATGCTTCTCCGGTATCAAATGTTGATGAGAAAGTGGTAAAAGAATGCGAAGGCAACTCCAATCATGATTTTAGCATTGACCCCATGTGTACAAACTGTCCAAATTTGGCTCCCAAAGGATACGATGTTACCGAAGAAGGTCTCTGGCTACATTGTATTCGGTATTCTGGACCTGGATGGACATATGAATGCCCATATCCTGAGTGGGCAAAAACTTA 1136 0.4199 MKRKREEEDMDIVWQTPANPPERQDYIFRNGIRYVRPYYFEFIAHVKNRWAGKTIVHMFADEFKGRPYEYYVSAVKCGRIQVDGEMVPVSYIVKSSQKISHFLHRHEPPVMACDVSVLQKEPDVVTVCKPASIPVHPCGQYRKNTVVGILQAEYGLAPLFLHRLDRLVSGLLILARNAPKADIFRQQIEAGLVNKQYIAKVVGEFPEDEQVADANINYDAREGRSVAEIRDSAKGKAATTKFRRISSNGAHSIVLCEPITGRTHQIRVHLQYLGHPIANDMLYLSEQTVDRSSQGTSADRAAFMSNASPVSNVDEKVVKECEGNSNHDFSIDPMCTNCPNLAPKGYDVTEEGLWLHCIRYSGPGWTYECPYPEWAKT 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01537 377 Gene3D Pseudouridine synthase 108 323 - -
Bva06g01537 377 TIGRFAM rluA_subfam: pseudouridine synthase, RluA family 49 299 IPR006225 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Bva06g01537 377 CDD PseudoU_synth_ScRIB2 100 376 - -
Bva06g01537 377 SUPERFAMILY Pseudouridine synthase 107 375 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Bva06g01537 377 Pfam RNA pseudouridylate synthase 123 271 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Bva06g01537 377 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 11 375 - -
Bva06g01537 377 PANTHER PSEUDOURIDINE SYNTHASE 11 375 - -
Bva06g01537 377 ProSitePatterns Rlu family of pseudouridine synthase signature. 161 175 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01537 Bva-Chr6 11033011 11038290 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01537 K15454 - gmx:100811500 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01537 06 11033011 11038290 Bva06g01537 06 11033011 11038290 ECH