Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01442 ATGGAAACTCACGCCACCACACTCTCTAACTCCATCTTTGAGAGCACGGCGCACCCACCGGACTTGCTTTCCCTTTCGCGTGAAACCGTGAAACACCGTTGCATTGCCTCCCTGAAAACCCTTACCCCTCATATCACGTGCCTCGCTTTTCGTCTCCATGAAAACCTTCTCTATGCCGCTTCTCTCAACCTAATCAACGTCTTCGATCTATCCCATTCTCAAAACAAGCTTATCGATGCATTTAACGATGACCCTAACGCGGGATTCGTCAAGTCCATTGCCTTCCACGATTCCAAGATCTTCACCGCTCATCAGGACTGCAAGATTCGCGCCTGGTTGATCACGCCGTCCAGAAAACACCGCCTTCTTTTCACGCTTCCAACCATTAAGGACTGCTTACGCCGTTTCATTTTGCCCCAGAACTACGTTAAAGTTCGACGACACAAGAGGAAGCTATGGATTCAACATTCTGATACAGTGTCGGGTTTAGTAGTGAACCAAACACTAATGTACTCGGTTTCTTGGGATAAAAGCTTAAAGATTTGGGATGTGGCTGATAATTACCGGTGTTTGGAGTCGGTTAAGGCGCATGAAGATGCGATCAACGCTGTTGCAGTGTCGGATGAGGGAACCGTTTACACGGCGTCAGCGGATGGGTGTATCAGAGTTTGGGAGAGAGACGACAAATTGAGAAGATATGCACTGGAGAGAACTCTGGAGAAGCAGAAATCAACTGTGAATGCGCTGGCTTTAAACGGGGATGGGAAGCTGCTGTTTTCAGGTGGTTGCGACGGTGTTATAACGGTATGGGAGAGGAAGGTCAACGATGGATCAGAAAACGACATGGTATCTTGTGAAAAATTATGGGGTCATGTAGGGGCTATATTGTGTTTGATCAATGTGGAGGGTGTATTAGCAAGTGGTTCGGCAGATCAGACAGTTAGGGTGTGGCAGTGGCAACACGATGGGGCAAATGCAAGTGCAAGAGTAGGGTATTGTTGTAAAGCAGTGCTGAAGGGGCACGAGAAACCCATAAAGTCATTAGCGGCATATTCCTCAAACGGCGTCGTTACTATATTTAGTGGGAGTCTTGACGGGTATATTAAGGTGTGGGATTTGTGTTGTCTGGCTTG 1133 0.4766 METHATTLSNSIFESTAHPPDLLSLSRETVKHRCIASLKTLTPHITCLAFRLHENLLYAASLNLINVFDLSHSQNKLIDAFNDDPNAGFVKSIAFHDSKIFTAHQDCKIRAWLITPSRKHRLLFTLPTIKDCLRRFILPQNYVKVRRHKRKLWIQHSDTVSGLVVNQTLMYSVSWDKSLKIWDVADNYRCLESVKAHEDAINAVAVSDEGTVYTASADGCIRVWERDDKLRRYALERTLEKQKSTVNALALNGDGKLLFSGGCDGVITVWERKVNDGSENDMVSCEKLWGHVGAILCLINVEGVLASGSADQTVRVWQWQHDGANASARVGYCCKAVLKGHEKPIKSLAAYSSNGVVTIFSGSLDGYIKVWDLCCLA 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01442 377 SUPERFAMILY WD40 repeat-like 31 373 IPR036322 GO:0005515
Bva06g01442 377 Pfam WD domain, G-beta repeat 334 372 IPR001680 GO:0005515
Bva06g01442 377 Pfam WD domain, G-beta repeat 189 224 IPR001680 GO:0005515
Bva06g01442 377 Pfam WD domain, G-beta repeat 237 270 IPR001680 GO:0005515
Bva06g01442 377 Pfam WD domain, G-beta repeat 290 317 IPR001680 GO:0005515
Bva06g01442 377 SMART WD40_4 31 69 IPR001680 GO:0005515
Bva06g01442 377 SMART WD40_4 74 113 IPR001680 GO:0005515
Bva06g01442 377 SMART WD40_4 232 271 IPR001680 GO:0005515
Bva06g01442 377 SMART WD40_4 331 372 IPR001680 GO:0005515
Bva06g01442 377 SMART WD40_4 281 318 IPR001680 GO:0005515
Bva06g01442 377 SMART WD40_4 187 225 IPR001680 GO:0005515
Bva06g01442 377 SMART WD40_4 147 183 IPR001680 GO:0005515
Bva06g01442 377 Gene3D - 21 128 IPR015943 GO:0005515
Bva06g01442 377 Gene3D - 232 376 IPR015943 GO:0005515
Bva06g01442 377 Gene3D - 143 231 IPR015943 GO:0005515
Bva06g01442 377 ProSiteProfiles Trp-Asp (WD) repeats profile. 288 318 IPR001680 GO:0005515
Bva06g01442 377 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 239 271 - -
Bva06g01442 377 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 194 225 - -
Bva06g01442 377 ProSitePatterns Trp-Asp (WD) repeats signature. 359 373 IPR019775 -
Bva06g01442 377 ProSiteProfiles Trp-Asp (WD) repeats profile. 338 373 IPR001680 GO:0005515
Bva06g01442 377 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 225 IPR001680 GO:0005515
Bva06g01442 377 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 29 373 - -
Bva06g01442 377 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 29 373 IPR045182 -
Bva06g01442 377 ProSiteProfiles Trp-Asp (WD) repeats profile. 239 271 IPR001680 GO:0005515
Bva06g01442 377 ProSitePatterns Trp-Asp (WD) repeats signature. 170 184 IPR019775 -
Bva06g01442 377 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 338 377 - -
Bva06g01442 377 PRINTS G protein beta WD-40 repeat signature 170 184 IPR020472 -
Bva06g01442 377 PRINTS G protein beta WD-40 repeat signature 305 319 IPR020472 -
Bva06g01442 377 PRINTS G protein beta WD-40 repeat signature 359 373 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01442 Bva-Chr6 10547214 10548347 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01442 96 371 Acyl Lipid Metabolism Gene Families AT3G18860 24.342 1.97e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01442 - - aprc:113874855 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01442 06 10547214 10548347 Bva06g01442 06 10547214 10548347 ECH