Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01422 ATGAAGCGGGTGAAGGCTATTGTCGCTTCCCTCAGGTTCGTTGATTCATTGCTCCCTACTCGTGTTTCTATAGCTCGACAAAGCCATCAAGTGACTCACTTCTCTCGCTTTACTCCACCCCTTGGGAGTTGTTCCCATGAtttccattttcctttctcttatGGCAAGGCCTACTTCTCTTCAAAGCCAAATTCGATTGTCGATCTTGTTTTGGCCAACAATTGGTCCGATGGTTTAGAACGCGATTTAGAAAAATTGCGTCCATCCATGACCCACGAAACTGCTCTTTACGTTTTGAAGAAACTGGATAAAATTCCTGAAAAAGCTTCGTCTTTCTTCCACTGGATCAGTGAGAAAGAGGGGTTCCCGCCAAGTTCTacaatttatagtttaattgTTAGGATTTTAGCGAATAAGAATACAATGAAGCAATTTTGGATTACCCTGAGGATGATGAAGGAAAAAGGGTTTTATCTTGATGAGGAGACGTATGTTACAATTCTTAGGGCTTTTAAAATATCGAAAATGAAAAGTGATGCTGTGGCTCTCACCCACTTCTATAACCGGATGCTTCAGGAAAATGCCATGGGAAATGTCATAACCAAGGTGGTTGATATCATTTTACGGTCAGAATGGAGTGATGAGGTTGAGAATCATTTAGGAAGCCTTAAAATTCTGCTGTCggataattttgtaatcaGGGTTTTGAAAGAGCTTCGACATTATCCAATGAAAGCTTACAAGTTGTTTCATTGGGTTGGAAAGCATACTAATTTTGAGCACAATACAGTGACATACAATGCAGCTGCGAGAGTTCTTGCAAGGGATGATTCAATTGACGAATTTTGGAGTATCGTCGAGGAGATGAAGAAAGTGGGTTATGAAATGGATATTGatacttacataaaaatatcaagGCAGTTTCAAAAGAACAAATTGATGGAGGATGCTGTCAAGCTTTATGAGCTTATGATGGATGGCCCCTTTAAGCCAACCGATCAGGAATGCAGTATCCTTCTAAAGAGTTTATCTGCTAGTGATACCCCAAATTTGGATTTAGTTTTCAGAGTAGCAAAAAAATATGCCTCAACTGGGTCTACACTCTCTAAGGCAATCTATGATGGAATCCATCGATCATTGACAAGTGCTGGCAAATTTGATGAAGCCGAAAAGATTGTTGAGGCCATGAGAAATGACGGCTATGAACCCGACAACATCACCTATAGTCAATTGGTTTTTGGACTTTGCAAGTTGAAGAGGTTTGAAGAAGCATGTAAGGTGCTGGATGAGATGGAATCTTGTGGATGTATCCCTGATATCAAGACCTGGACCATCTTGATTCAAGGACATTGTGACGCCAATGAAGTGGGAAATGCACTAATTTGTTTTGCTAAGATGATTGAGAAAGGTTGCGAACCAGATGCAGATTTATTGGATGTTCTGCTTGATGGTTTTCTTAGTCAAAACAGAATAGAAGGTGGATACAAGTTGCTGTTAGAGATGATTAGTGCATGTCGAATATCTCCATGGCAAGCTACCTTCAAGCGACTCATTGAAAAGCTTTTAGGAGTCAGGAAATTTGAGGAGGCACTGAACCTTCTTCGGTTGATGAAGAAACATAATTACCCTCCTTTTGCTGAACCTTTCGTACAGTATATTTCTAAGTTTGGAACTGTGGAGGATGCTGATGAATTCCTGAAGGCTTTGAGTGTGAAAAGCTATCCGTCCCTTAGAGCGTACCTTcatatatttgattctttctttcgaGAAGGTAGACATTCCGAGGCCAAAGATCTGCTATACAAGTGTCCTCACCACATACGTAAACATGGTAAAATCTGTCAACTTTTTGGCTCTGCTGAATCGCACAGCTTAGACTCTTG 1883 0.3909 MKSDAVALTHFYNRMLQENAMGNVITKVVDIILRSEWSDEVENHLGSLKILLSDNFVIRVLKELRHYPMKAYKLFHWVGKHTNFEHNTVTYNAAARVLARDDSIDEFWSIVEEMKKVGYEMDIDTYIKISRQFQKNKLMEDAVKLYELMMDGPFKPTDQECSILLKSLSASDTPNLDLVFRVAKKYASTGSTLSKAIYDGIHRSLTSAGKFDEAEKIVEAMRNDGYEPDNITYSQLVFGLCKLKRFEEACKVLDEMESCGCIPDIKTWTILIQGHCDANEVGNALICFAKMIEKGCEPDADLLDVLLDGFLSQNRIEGGYKLLLEMISACRISPWQATFKRLIEKLLGVRKFEEALNLLRLMKKHNYPPFAEPFVQYISKFGTVEDADEFLKALSVKSYPSLRAYLHIFDSFFREGRHSEAKDLLYKCPHHIRKHGKICQLFGSAESHSLDS 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01422 452 PANTHER OS01G0970900 PROTEIN 1 445 IPR044578 GO:0008380
Bva06g01422 452 Pfam PPR repeat 201 225 IPR002885 -
Bva06g01422 452 Pfam PPR repeat 89 118 IPR002885 -
Bva06g01422 452 Pfam PPR repeat family 239 276 IPR002885 -
Bva06g01422 452 Gene3D Tetratricopeptide repeat domain 206 332 IPR011990 GO:0005515
Bva06g01422 452 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 87 121 IPR002885 -
Bva06g01422 452 PANTHER OS01G0970900 PROTEIN 1 445 - -
Bva06g01422 452 Gene3D Tetratricopeptide repeat domain 52 205 IPR011990 GO:0005515
Bva06g01422 452 TIGRFAM PPR: pentatricopeptide repeat domain 203 229 IPR002885 -
Bva06g01422 452 TIGRFAM PPR: pentatricopeptide repeat domain 267 300 IPR002885 -
Bva06g01422 452 TIGRFAM PPR: pentatricopeptide repeat domain 89 122 IPR002885 -
Bva06g01422 452 TIGRFAM PPR: pentatricopeptide repeat domain 231 265 IPR002885 -
Bva06g01422 452 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Bva06g01422 452 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Bva06g01422 452 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01422 Bva-Chr6 10463333 10465557 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01422 89 427 Miscellaneous Gene Families AT4G11690 24.198 1.48e-21 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01422 - - gmx:100815857 700.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01422 06 10463333 10465557 Bva06g01422 06 10463333 10465557 ECH