Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01328 ATGGCGAACACAGCAACGGTTTATGTTTACAACATTCCACAATCTGCCATAGCCAAAGAATTATTAGCATACCTAGAGACGGTGGTGGGTCGCGACTCAGTCTTCGCCATAGATATCGTAACAGAGCGCAAGAACTGGAAGTCTCGGGGCTTCGGCCGTGTCCAGTTCACTACCCTTGAGGCAAAAGCCAGAGCCAAATCTCTGGGTCTCCAAAACAATCTTATCTTTAAATCCCACTACCTCAGAATCTCGGAAAGCTATGAGGACATCATCTTCAGGCCTGTCGAAGCCAAGAACCGGGTTGAAGATACAGTCCTGCATGTGGGTTTTATGATAAAAGATGATTGTATGTGTTCGTTAGAACCATTGAAGCCTGTCAGAGCTTGGATCATGCCCGAGAGGAAGAGGGTTGAGTTCTGGGTGTGGCGGCGTCAAGAGTGTTATAAACTCGAAATAATGTTTGAGGACATTTTGGAGGCTAACGGGTTCTGTTTAACACAAGGGAAACTGAATGCTCTGGTTTTGCAGcTCAAATATGGGCCAAGGATCTATCAGAAAATGGCTGGACCAAATATTGCGTCAAAATTCAGTGCTGACAGGTACCATCTTTGTAAGGAGGAATTTGAATTTGCTTGGGTGCGCGTGACAGACTTCACAGCTATGAAGTCCATCGGATACTCTACTTCAGTCTGTTGGCATGTTGGAGATGAACCATTAGCTTCagatattttccaaaatttcccACTTTacagagaaaatttaaaagtgcTGATGTTAGAAGATGGGGAAGGATACTGTTCTTCATCAGAAACAGTTCCACTTGTAAAGTGTGGTTCTTATTCCAAGTTACCATATGAGATTCTTTTCCAGCTCAATTCACTTGTTCATACCCAGAAACTTAGTCTTGCTTCAGTAGCTGATGATTTGATTGACTGGTTTAGCAACATAGATGAAGAAACTGCCAACATAATTCTTCAGAAGTTGCACAAGCTGCAGTTCACTTGTTATGAGCCGCTAGAATTTGTTGAGACTGAATTACAAGTTATAAGGAATAACTACAAAGGTCTTCCACCACCATCATTACGCAGAAGGctgacaaataataatataatgagTTGTCATAGAGCCCTGATTACCCCAACAAAGATTTATTGCCTTGGTCCTGAGCTTGAGACCTCAAATTATGTGGTAAAGAATTTTTCACAGTATGCTTCAGACTTCATGAGGATTACTTTTGTTGAGGAGGATTGGAGTAAGCTTCCAGCTAATGCAGTGTCCACTAGTAttcataaaaatgttttttcaaaGCCTTTCAGAACTGAAATATATAAGCGAATATTGACCATTCTTCGAGATGGAATTGTAATTGGAAACAAAAGATTTGAGTTTCTGGCCTTTTCAGCTAGTCAACTCCGATCAAGTTCTGTTTGGATGTTTGCTTCTAATGACAAGGTAAAAGCAGAAGATATCAGAGAATGGATGGGATGCTTCAGCAGGATTCGCAGTATTTCTAAATGTGCAGCAAGGATGGGTCAGTTGTTTAGCTCTTCTATGCAAACACTTGTAGTGCCCGTTCAAGATGTGGAGCAAATTCCAGACGTTGAAGTTACCACAGATGGTAAAGAGTACTGTTTTTCAGATGGCATTGGAAAAATTTCCCAATCTTTTGCAAGGCAAGTTGCTCAGAAGCTTGGATTGGATCATACTCCATCAGCTTTTCAAATTCGATATGGTGGATATAAGGGTGTCATTGCTGTTGATCGTCATTCCTTTAGGAAGTTATCACTGCGGAGCAGTATGCTTAAATTTGAATCCAAAAACAGGATGCTTAATGTCACTAAATGGAATGACGCAATGCCTTGCTTTCTCAATCGAGAGATTATAATCTTGCTGTCTACCTTgggagtaaaagatgaagtatttgaggCATTGCAACAGGAACAAATGACCTTCCTAGGCAAGATGTTGATCAATAGAGAAGCAGCATTAAATGTTCTTGAAAGTTTGAATGCTTCTGATTCAAAAAAATGTATTCTGGTGAAGATGCTGCTTCAAGGTTATGAACCAAACGCCGAACCTTACTTATCAATGATGATTAAGGCTCATTATGAATCACAATTATCTGATTTGAAAAGTAGATGCCGAATCTTTGTCCCCAAGGGTCTGGTCTTAATAGGTTGCTTGGATGAAACTGGGGTTTTAAACTATGGCCAAGTTTATGTCCGTATGAGCATGACAAAAGCAAAGCAACAATTTGGAGATGAAAGGTTCAAGAAACTGGATGACAACACGTGCGTATTAGTGGGGAAGGTGGTTGTGACCAAAAACCCTTGTCTTCACCCAGGAGATGTCAGAGTACTTGATGCTATCTATGATGTTGAATTAGAGGAGAAGGGTTTGAGGGATTGCCTTGTCTTCCCGCAAAAAGGACATAGGCCTCATCCAAATGAATGCTCCGGTGGGGATCTGGATGGAGATTTGTTTTTCATAAGCTGGGACGAAGGTCTCATCCCATGTCAAACAGAGACTCCAATGGACTACACAGGAAGGAGGCCTCGCATAATGGACCACGACGTGACACTAGAGGAGATCCAACAATTTTTTGTCGATTACATGATCAACGATACCTTGGGTGCTATCTCAACTGCTCATTTGGTTCTCGCCGACCGTGAACCAGAAAAGGCCAGGAGTCGAAAATGCCTTGAGTTGGCAGAGCTTCACTCCATGGCTGTTGATTTTGCAAAGACCGGAGCACCGGCCGAAATGCCGAGAACTTTGAAACCAAGAGCGTATCCAGATTTTATGGAGAGGATGGACAAAGCAATGTATACCTCTACTAGTGTACTGGGAAAACTATACCGAGCTGTAATTGAGTCAAATCTGCAGATGAGGTCAAGGTTTGAGTGGTCAGAGGATGTTGCCGCAGCGGCATACGATTATGATCTTGAAGTTGATGGCTTTGAGgcatttattgaaattgcCAAGAGTCACAAAGAGATGTACGTAGAGAAAATGGTGAGTTTGATGAAGTTCTATGGGGCCAAGACTGAGGATGAGATGATGACGGGTAACTTGAGAAACCGTGATACGTATCTGCAGCGCGACAACAGGAGATACGGAGATATGAAGGATAGGATTGTGTTATCAGTTAAGAATCTGCAAAATGAAGCTAAGGAATGGTTCGAAACTAGTTGCCAACAGCAACAGCATCAACGTCTGCAGATGGCATCCGCTTGGTACCATGTCTCTTACCACCCACGATTTTACAGCAAAAGCTTTAGCTGTTTGAGCTTTCCATGGATTCTAGGCGACATTTTATTGCAAATAAAGTCTTTAAATAGTGGATCAATGCAGAGCTG 3359 0.4085 MANTATVYVYNIPQSAIAKELLAYLETVVGRDSVFAIDIVTERKNWKSRGFGRVQFTTLEAKARAKSLGLQNNLIFKSHYLRISESYEDIIFRPVEAKNRVEDTVLHVGFMIKDDCMCSLEPLKPVRAWIMPERKRVEFWVWRRQECYKLEIMFEDILEANGFCLTQGKLNALVLQLKYGPRIYQKMAGPNIASKFSADRYHLCKEEFEFAWVRVTDFTAMKSIGYSTSVCWHVGDEPLASDIFQNFPLYRENLKVLMLEDGEGYCSSSETVPLVKCGSYSKLPYEILFQLNSLVHTQKLSLASVADDLIDWFSNIDEETANIILQKLHKLQFTCYEPLEFVETELQVIRNNYKGLPPPSLRRRLTNNNIMSCHRALITPTKIYCLGPELETSNYVVKNFSQYASDFMRITFVEEDWSKLPANAVSTSIHKNVFSKPFRTEIYKRILTILRDGIVIGNKRFEFLAFSASQLRSSSVWMFASNDKVKAEDIREWMGCFSRIRSISKCAARMGQLFSSSMQTLVVPVQDVEQIPDVEVTTDGKEYCFSDGIGKISQSFARQVAQKLGLDHTPSAFQIRYGGYKGVIAVDRHSFRKLSLRSSMLKFESKNRMLNVTKWNDAMPCFLNREIIILLSTLGVKDEVFEALQQEQMTFLGKMLINREAALNVLESLNASDSKKCILVKMLLQGYEPNAEPYLSMMIKAHYESQLSDLKSRCRIFVPKGLVLIGCLDETGVLNYGQVYVRMSMTKAKQQFGDERFKKLDDNTCVLVGKVVVTKNPCLHPGDVRVLDAIYDVELEEKGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFISWDEGLIPCQTETPMDYTGRRPRIMDHDVTLEEIQQFFVDYMINDTLGAISTAHLVLADREPEKARSRKCLELAELHSMAVDFAKTGAPAEMPRTLKPRAYPDFMERMDKAMYTSTSVLGKLYRAVIESNLQMRSRFEWSEDVAAAAYDYDLEVDGFEAFIEIAKSHKEMYVEKMVSLMKFYGAKTEDEMMTGNLRNRDTYLQRDNRRYGDMKDRIVLSVKNLQNEAKEWFETSCQQQQHQRLQMASAWYHVSYHPRFYSKSFSCLSFPWILGDILLQIKSLNSGSMQS 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01328 1119 PANTHER RNA-DEPENDENT RNA POLYMERASE 3 1115 IPR007855 GO:0003968
Bva06g01328 1119 Gene3D - 2 89 IPR012677 -
Bva06g01328 1119 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 3 1115 - -
Bva06g01328 1119 CDD RRM_SF 7 84 - -
Bva06g01328 1119 Pfam RNA dependent RNA polymerase 378 956 IPR007855 GO:0003968
Bva06g01328 1119 SUPERFAMILY RNA-binding domain, RBD 4 91 IPR035979 GO:0003676
Bva06g01328 1119 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 5 88 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01328 Bva-Chr6 9971796 9975809 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01328 K11699 - gmx:100808274 1626.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01328 06 9971796 9975809 Bva06g01328 06 9971796 9975809 ECH