Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01296 ATGGTTTCTGATTCAACCACCACCGCTCCAATTCCCTCTGCCGCGAACACTAAGAACCTGGGCAAGAAGAAGAGGACCACTAGGTCCGCCAAATTGAAGCAGTGTAAGTTCGATGCCCGTCGTGAGCAATGGCTATCTCAAGGTATTCTCAAGAACAAGGGATGCAAAGATGGACAGGAATTGGATGATGTTCACATGCCGCCAACGCCAGAGCGGAAAGAGAGCAAACGTTCGTTGGAGAAATTGGAGATGAGGCATAGAAGGGAAGAGAATGACGGATCGATCCAACAAGATAGCGATTTGGAGTCGCTATCCAATAGTCTCACCAGTTTTAATAGTAGTGTGTTGAGTGGTAATGATTCTGGAACAAATTTCACTGggagcagcagcagcagcagcagtaGCAGTGCCGGGTGCTGGTCTGGGAATATCacggaagaagaagaaggcgATGACGGATGCTTGGATGACTGGGAGGCTGTCGCTGATGCATTAGCCGCGGATGACAAGCATCAAAACCAGAGTTCAGAGTCGCCCCCTGCGCATGAAGTACAAATGGTTTCTCCTTGTGAAATAACTAATGGGTCGAATTTAGGAGTGCAGGATTCTAAACCAGAGAGTTCTAGATTAGTTCCCAGGGCATCGGGAAATTGCCGAGCTTGGAGGCCTGATGATGCTTTTCGCCCTCAGAGTTTACCCAATCTGTCTAAGCAGTATAGTTTACCAAATCCTGACCGGCATTATGGAGGGGTGCATTGGGCTTGCACTGCCGTACCATCATCATGTCCAATATGCTACGAGGATCTGGATGTCACAGACTCAAGTTTTTTACCTTGTTCATGTGGGTTTCGGCTTTGCCTATTTTGCCACAAGAGGATTCTTGAGGAAGATGGGCGCTGTCCCGGATGCAGGAAATCATATGAGTGCGAACCTATTGAGACAGAGGCAAGTGTGCATGGAGGCAGCCTGACTTTCCGGTTGGCCCGTGCTTGCAGCATGATTGAAAGGTCTTA 1013 0.464 MVSDSTTTAPIPSAANTKNLGKKKRTTRSAKLKQCKFDARREQWLSQGILKNKGCKDGQELDDVHMPPTPERKESKRSLEKLEMRHRREENDGSIQQDSDLESLSNSLTSFNSSVLSGNDSGTNFTGSSSSSSSSSAGCWSGNITEEEEGDDGCLDDWEAVADALAADDKHQNQSSESPPAHEVQMVSPCEITNGSNLGVQDSKPESSRLVPRASGNCRAWRPDDAFRPQSLPNLSKQYSLPNPDRHYGGVHWACTAVPSSCPICYEDLDVTDSSFLPCSCGFRLCLFCHKRILEEDGRCPGCRKSYECEPIETEASVHGGSLTFRLARACSMIERS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01296 337 MobiDBLite consensus disorder prediction 192 210 - -
Bva06g01296 337 MobiDBLite consensus disorder prediction 55 95 - -
Bva06g01296 337 MobiDBLite consensus disorder prediction 1 15 - -
Bva06g01296 337 Coils Coil 72 92 - -
Bva06g01296 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 319 IPR013083 -
Bva06g01296 337 SUPERFAMILY RING/U-box 260 313 - -
Bva06g01296 337 MobiDBLite consensus disorder prediction 167 186 - -
Bva06g01296 337 CDD mRING-HC-C4C4_CNOT4 262 305 IPR039515 -
Bva06g01296 337 MobiDBLite consensus disorder prediction 192 211 - -
Bva06g01296 337 Pfam RING/Ubox like zinc-binding domain 262 308 - -
Bva06g01296 337 MobiDBLite consensus disorder prediction 97 142 - -
Bva06g01296 337 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 9 335 IPR039780 GO:0004842|GO:0030014
Bva06g01296 337 ProSiteProfiles Zinc finger RING-type profile. 262 304 IPR001841 -
Bva06g01296 337 MobiDBLite consensus disorder prediction 48 152 - -
Bva06g01296 337 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 335 - -
Bva06g01296 337 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01296 Bva-Chr6 9824272 9825910 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01296 - - gmx:100792365 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01296 06 9824272 9825910 Bva06g01296 06 9824272 9825910 ECH