Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01292 ATGCCCCTTTTACCCTCCCTCTCTGTATCCAACCCTTCACCTTTCTCCACCACGCTTCTCAAACGCAGCCGTAACTTGCAACAATTCCCTTTTGGTCCTCAAACCCAAGGTTTCTTACTCCATTGGAGATTCCTCTCCGGTGACCGGGCATTTCAATTTGAACCCGCCAAAGCCCGAGTGAAGACCAGGGAACTAATCCTTGGTAACCCCAAGGTGACTGTAGAGAAAGGCAAGTATAGCTACGATGTTGAAACACTAATCAACAAGCTTAGCAGCTTGCCTCCCCGAGGTAGCATAGCTCGGTGTCTTGACACCTTCAAGAAGAAACTTTCCTTAAATGATTTTGCGCTAGTCTTCAAGGAGTTCGCTCAGCGGGGTGACTGGCAACGTTCGCTGCGCCTTTTCAAGTACATGCAGCGCCAGATATGGTGTAAGCCTAATGAACAGATATACACCATTATGATTACCTTATTGGGCCGTGAAGGGTTGCTTGACAAATGCAGCGAGATATTCGACGAAATGGCTAGCCAAGGGGTAGCTCGGAGTGTGTTCTCGTACACGGCGATAATCAATGCCTACGGGCGCAATGGTCAGCATGAGACTTCGGTTGAGCTCCTTGATAGAATGAAAAGGGAGAGGGTTTCTCCCAGCATATTAACTTACAATACTGCGATAAATGCTTGTGCTCGGGGTGGGATGGATTGGGAGGATTTATTGGGCTTGTTTGCAGAAATGAGGCATGAAGGGATACAGCCTGATGTTATTACTTACAATACTTTGCTTAGTGCCTGTGCTAACAGAGGTTTAGGTGATGAAGCTGAAATGGTGTTCAGAACCATGAATGAAGGTGGGATAGTTCCTGATACAACAACTTACAATTATCTTGTAGAGACATttggaaaattgaataaacttGAGAAGGTTTCAGAGCTTCTAAGAAAAATGGAGCATGGGGGTAATTTGCCAGATGTAAcatcttataatatattactaGGTGCATATGCACAGTCAGGGTCCATCAAAGAAGCGGTGGGTGTGTTTCGGCAGATGCAGACAGCAGGTTGTGTGCCAAATGCACAAACATATAGTATTTTACTGAATTTGTATGGAAGGCATGGAAGGTATGATGATGTCCGTGACCTTTTTCTCGAAATGAAAGTGAGCAATACGGATCCAGATGCTGGTACTTATAATATTCTTATACAGGTCTTTGGAGAAGGTGGATATTTCAAGGAGGTGGTTACTTTGTTTCATGATATGGTGGAAGAGGATATTGAACCAAACATGGAGACGTATGAGGGTCTGATATTTGCTTGTGGAAAGGGAGGGCTCCATGAAGATGccaagaaaattttacttcACATGAATGAGAGGGGAATAGTGCCAAGTACCAAGGCTTACACTGGGGTAATTGAAGCATGTGGGCAAGCAGCACTATATGAGGAGGCTCTAGTTGCGTTTAACACAATGAATGAAGTAGGAAGCAAACCAACTGTTGAAACCTATAATTCACTCAATCATGCATTTGGAAGGGGTGGACTGTACAAGGAATCTGAAGCAATTATATTAATGATGGGTGAGTCTGGTGTAACACGGGATGTAAATTCGTTCAATGGTTTGATTGAAGCTTTTCGGCAGGGAGGTCAGTATGAAGACGCTGTAAAAGCTTATGTTGAGATGGGGAAAAAGAACTGTGATTCTAATGAGTTGACACTTGAAGCAGTGTTAAGCGTCTACTGCTCTGCAGGTCTAGTAGAAGAGAGCGAAGAGCTGTTCCAAGAAATTAAAGCTTTGGGAACCCTGCCTAGTGTCATGTGCTACTGCATGATGCTATCTCTCTATGCAAAGAATGAGAGGTCAAATGATGCCTATAATCTGCTTGATGAGATGATCGGAACTAGGGTATCAGATATTCATCAAGTGATTGGACAGATGATCAAGGGAGATTTTGATGATGACTCTAATTGGCAGATTGTAGAGTATGTCTTTGACAAACTTTATTCTGAAGGATGTGGATTGGGAATGAAGTTTTATAATTCTCTTTTAGAAGCTCTTTGGTGGATGGGCCAGAAGGAAAGGGCTGCAAGGGTGCTTAATGAAGCATCAAAGCAAGGGCTTTTTCCTGAACTTCTCCGTAAAAATAAACTTGTGTGGTCTGTGGACGTACACAGGATGTCAGAAGGTGGTGCGTTAACAGCTCTATCGATTTGGCTGAATAGCATGCAGGAGATGTTCATGACTGGCGAGGATCTTCCTCAGCTAGCAGCTGTTGTTGTAGTGCGTGGTCGAATGGAGAGAAGCACTGATAGCCAAGACTTTCCTATCGCAAAGGCTGCGTTGTCATTCTTGCAGGATAATGTCTCGTCGTCCTTTACATTCCCCGAGTGGAACAAAGGTCGCATTGTATGTCAACCGTCACAGCTGAGGCGAATTCTGTCTGCCACAGAATCATCCTCAACTAGGGCAAAAAATGCTAAGTTAATATCTTTAAGCAACACCCCTTTGACTCTTACAGGAGCAAGAACATCCAAATCTGATATGCATAGTGGTAACGCTAATGGTGTTGATTCTAGAACAGAAAGTAGTACGAGAACAGAGCTTCTAACTGGTGCagttta 2618 0.4316 MPLLPSLSVSNPSPFSTTLLKRSRNLQQFPFGPQTQGFLLHWRFLSGDRAFQFEPAKARVKTRELILGNPKVTVEKGKYSYDVETLINKLSSLPPRGSIARCLDTFKKKLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEQIYTIMITLLGREGLLDKCSEIFDEMASQGVARSVFSYTAIINAYGRNGQHETSVELLDRMKRERVSPSILTYNTAINACARGGMDWEDLLGLFAEMRHEGIQPDVITYNTLLSACANRGLGDEAEMVFRTMNEGGIVPDTTTYNYLVETFGKLNKLEKVSELLRKMEHGGNLPDVTSYNILLGAYAQSGSIKEAVGVFRQMQTAGCVPNAQTYSILLNLYGRHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEEDIEPNMETYEGLIFACGKGGLHEDAKKILLHMNERGIVPSTKAYTGVIEACGQAALYEEALVAFNTMNEVGSKPTVETYNSLNHAFGRGGLYKESEAIILMMGESGVTRDVNSFNGLIEAFRQGGQYEDAVKAYVEMGKKNCDSNELTLEAVLSVYCSAGLVEESEELFQEIKALGTLPSVMCYCMMLSLYAKNERSNDAYNLLDEMIGTRVSDIHQVIGQMIKGDFDDDSNWQIVEYVFDKLYSEGCGLGMKFYNSLLEALWWMGQKERAARVLNEASKQGLFPELLRKNKLVWSVDVHRMSEGGALTALSIWLNSMQEMFMTGEDLPQLAAVVVVRGRMERSTDSQDFPIAKAALSFLQDNVSSSFTFPEWNKGRIVCQPSQLRRILSATESSSTRAKNAKLISLSNTPLTLTGARTSKSDMHSGNANGVDSRTESSTRTELLTGAV 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01292 872 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 58 833 - -
Bva06g01292 872 Pfam Pentatricopeptide repeat domain 170 228 IPR002885 -
Bva06g01292 872 Pfam Pentatricopeptide repeat domain 455 510 IPR002885 -
Bva06g01292 872 Pfam Pentatricopeptide repeat domain 525 579 IPR002885 -
Bva06g01292 872 Pfam Pentatricopeptide repeat domain 241 301 IPR002885 -
Bva06g01292 872 SMART SMR_2 717 806 IPR002625 -
Bva06g01292 872 Gene3D Tetratricopeptide repeat domain 233 314 IPR011990 GO:0005515
Bva06g01292 872 Gene3D Tetratricopeptide repeat domain 455 528 IPR011990 GO:0005515
Bva06g01292 872 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Bva06g01292 872 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Bva06g01292 872 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Bva06g01292 872 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 533 567 IPR002885 -
Bva06g01292 872 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Bva06g01292 872 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Bva06g01292 872 ProSiteProfiles Smr domain profile. 720 809 IPR002625 -
Bva06g01292 872 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
Bva06g01292 872 TIGRFAM PPR: pentatricopeptide repeat domain 536 566 IPR002885 -
Bva06g01292 872 TIGRFAM PPR: pentatricopeptide repeat domain 255 289 IPR002885 -
Bva06g01292 872 TIGRFAM PPR: pentatricopeptide repeat domain 396 428 IPR002885 -
Bva06g01292 872 TIGRFAM PPR: pentatricopeptide repeat domain 291 324 IPR002885 -
Bva06g01292 872 TIGRFAM PPR: pentatricopeptide repeat domain 431 463 IPR002885 -
Bva06g01292 872 TIGRFAM PPR: pentatricopeptide repeat domain 184 217 IPR002885 -
Bva06g01292 872 TIGRFAM PPR: pentatricopeptide repeat domain 220 254 IPR002885 -
Bva06g01292 872 TIGRFAM PPR: pentatricopeptide repeat domain 150 180 IPR002885 -
Bva06g01292 872 TIGRFAM PPR: pentatricopeptide repeat domain 574 603 IPR002885 -
Bva06g01292 872 TIGRFAM PPR: pentatricopeptide repeat domain 326 359 IPR002885 -
Bva06g01292 872 TIGRFAM PPR: pentatricopeptide repeat domain 361 394 IPR002885 -
Bva06g01292 872 MobiDBLite consensus disorder prediction 838 872 - -
Bva06g01292 872 Gene3D Tetratricopeptide repeat domain 91 232 IPR011990 GO:0005515
Bva06g01292 872 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 568 602 IPR002885 -
Bva06g01292 872 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Bva06g01292 872 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 532 IPR002885 -
Bva06g01292 872 Pfam PPR repeat 606 631 IPR002885 -
Bva06g01292 872 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 58 833 - -
Bva06g01292 872 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 428 462 IPR002885 -
Bva06g01292 872 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 252 IPR002885 -
Bva06g01292 872 Gene3D Tetratricopeptide repeat domain 533 648 IPR011990 GO:0005515
Bva06g01292 872 Gene3D Tetratricopeptide repeat domain 315 454 IPR011990 GO:0005515
Bva06g01292 872 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Bva06g01292 872 Pfam PPR repeat family 392 439 IPR002885 -
Bva06g01292 872 Pfam PPR repeat family 322 367 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01292 Bva-Chr6 9801645 9805969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01292 465 717 Miscellaneous Gene Families AT4G11690 23.019 3.53e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01292 - - gmx:100797731 1371.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01292 06 9801645 9805969 Bva06g01292 06 9801645 9805969 ECH