Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01227 ATGAGCAGCTCGCAACAGCTATGCCTTTTCCTGTTGAGTAAGTGCAGGAGCCTGAAATCGGCAAAGCAAATACATGCCCATGTCTACAAGAATGGCCTTGATACTGATCCCTTAGTTGCTGGCAAGCTCCTTCTCCTTTGCGCGGTTTCCATCTCCGATGCTCTCCACTATGCTCGCTGCCTACTCCAGCAATTTCCCAACCCAGATGCTTTTATGTATAACACGCTTATTCGAGGACTTGCTGAGTCTGAAACTCCTAGCGATTCCCTTCATACTTTCGTCAAAATGCGCCGACAATCCATTGTTCTCCCGGATAGTTTCTCTTTCGCATTTACACTCAAAGCTGTTGCTAATTGTAGGTCTTTGAGAGCTGGTTTACAGTTGCATGGTCAGGCTTTATGTCATGGGCTGGACAGCCACCTTTTTGTTGGGACAACTCTGATAAGTATGTATGCGGAATGTGGAAACGTGCACTCTGCAAGACAGATTTTTGAGGAAATGTCTGATCCAAACGTTGTCACATGGAATGCAGTTGTCACTGCGTCTTTTAGGTGTGGGGATATGGAGGGTGCAGAACATATGTTTAAACGAATGCCCATTCGAAATTTGACCTCATGGAATGTGATGCTTGCTGGGTATACCAAAGCAGGTAAGCTCGAGTCGGCAAGACAAGCATTTTCTGAAATGCCTCTCAAAGACGATGTTTCTTGGAGTACTATGATTGTTGGGTTTGCTCACAACGGTTTATTCGATGAGGCTTTTGGATTTTTCAGGCAGCTGCAGCGGGAGGGAATTAGACCAAACGAGGTTAGCTTGACAGGGGTCCTGTCTGCTTGTGCACAAGCTGGGGCATTTGAATTTGGGAAGATTTTACATGGATTTCTCCAGAAATCTGGATTTCTTCAGATTGTTTCAGTGAGTAATGCTCTAATAGATACATATTCAAGGTGTGGAAATGTTGCTATGGCTAGATTGGTCTTTCAAAGCATGTTAGTGGGAAGGAATGTTGTTTCTTGGACATCGATGATAGCAGGACTTGCAATGCATGGTCATGGAGAAGAGGCAATAGAACTTTTTCATGAGATGGAAGAGTGTGGAGTTACGCCAGATGGTATCACCTTCATTTCACTTCTATATGCTTGCAGTCATGCTGGCTTGGTTGAGCAAGGGTGTGCTTACTTCTCTAAGATGAAGATTGTGCATGGCATTGAACCTGCAATTGAGCATTATGGTTGTATGGTTGATCTGTATGGTCGAGCTGGTAAGTTAGAGAAGGCCTATGAATTTGCATGTCAAATGCCAATTTCACCTAATGCAATTATTTGGAGGACTCTCCTTGGGGCTTGTAGCATACATGGCAATGTTGAGTTGGCGGAGCTAGTGAAGGCAAGGCTTTCTGAAATGGATCCAAACAACTCCGGTGACCATGTACTTCTTTCAAATGTGTATGCCATTGCAGGGAAATGGAAGGAAGTTACCACCACAAGAAGATCAATGACTGAACAGAGGATGACAAAGACTCCAGGTTGGAGCATGATTGAAATTGACAAAGTAATGTATAGTTTTGTGGCAGGTAAAAACCCAAATGTGGTTACAGAGGTGGCTTATCATAAACTGACAGAAATAATGTTGAGACTCCGAGCAGAAGTAGGTTACGAACCACAAGTAAGGAGTGTTTTGCATGATATTgaacaggaagaaaaagaagattcaGTGTCTAAGCACAGTGAGAAGCTTGCTGTAGCTTTTGGAATAGCAAAACTTTCTGAGGGAAGGATTATAAGAATAGTGAAGAACCTTAGGATTTGTGCGGATTGCCACACGGTGATGAAGTTGATATCTAAGGTTTATCAAATAGAAATCACTGTGAGAGATAGAAGTCGCTTCCACTTGTTCAAAGATGGAGTTTGTTCTTGCAGAGACTACTGGTA 1931 0.4278 MSSSQQLCLFLLSKCRSLKSAKQIHAHVYKNGLDTDPLVAGKLLLLCAVSISDALHYARCLLQQFPNPDAFMYNTLIRGLAESETPSDSLHTFVKMRRQSIVLPDSFSFAFTLKAVANCRSLRAGLQLHGQALCHGLDSHLFVGTTLISMYAECGNVHSARQIFEEMSDPNVVTWNAVVTASFRCGDMEGAEHMFKRMPIRNLTSWNVMLAGYTKAGKLESARQAFSEMPLKDDVSWSTMIVGFAHNGLFDEAFGFFRQLQREGIRPNEVSLTGVLSACAQAGAFEFGKILHGFLQKSGFLQIVSVSNALIDTYSRCGNVAMARLVFQSMLVGRNVVSWTSMIAGLAMHGHGEEAIELFHEMEECGVTPDGITFISLLYACSHAGLVEQGCAYFSKMKIVHGIEPAIEHYGCMVDLYGRAGKLEKAYEFACQMPISPNAIIWRTLLGACSIHGNVELAELVKARLSEMDPNNSGDHVLLSNVYAIAGKWKEVTTTRRSMTEQRMTKTPGWSMIEIDKVMYSFVAGKNPNVVTEVAYHKLTEIMLRLRAEVGYEPQVRSVLHDIEQEEKEDSVSKHSEKLAVAFGIAKLSEGRIIRIVKNLRICADCHTVMKLISKVYQIEITVRDRSRFHLFKDGVCSCRDYW 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01227 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Bva06g01227 643 Gene3D Tetratricopeptide repeat domain 398 578 IPR011990 GO:0005515
Bva06g01227 643 Gene3D Tetratricopeptide repeat domain 165 231 IPR011990 GO:0005515
Bva06g01227 643 Gene3D Tetratricopeptide repeat domain 289 397 IPR011990 GO:0005515
Bva06g01227 643 Pfam DYW family of nucleic acid deaminases 551 643 IPR032867 GO:0008270
Bva06g01227 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 69 103 IPR002885 -
Bva06g01227 643 Pfam PPR repeat family 232 280 IPR002885 -
Bva06g01227 643 Pfam PPR repeat family 334 382 IPR002885 -
Bva06g01227 643 PANTHER - 11 584 - -
Bva06g01227 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Bva06g01227 643 Pfam PPR repeat 71 99 IPR002885 -
Bva06g01227 643 Pfam PPR repeat 409 433 IPR002885 -
Bva06g01227 643 Pfam PPR repeat 308 331 IPR002885 -
Bva06g01227 643 Pfam PPR repeat 205 230 IPR002885 -
Bva06g01227 643 Pfam PPR repeat 145 168 IPR002885 -
Bva06g01227 643 Pfam PPR repeat 173 200 IPR002885 -
Bva06g01227 643 Gene3D Tetratricopeptide repeat domain 7 164 IPR011990 GO:0005515
Bva06g01227 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Bva06g01227 643 PANTHER OS01G0913400 PROTEIN-RELATED 11 584 - -
Bva06g01227 643 TIGRFAM PPR: pentatricopeptide repeat domain 173 199 IPR002885 -
Bva06g01227 643 TIGRFAM PPR: pentatricopeptide repeat domain 145 168 IPR002885 -
Bva06g01227 643 TIGRFAM PPR: pentatricopeptide repeat domain 205 229 IPR002885 -
Bva06g01227 643 TIGRFAM PPR: pentatricopeptide repeat domain 235 269 IPR002885 -
Bva06g01227 643 TIGRFAM PPR: pentatricopeptide repeat domain 337 370 IPR002885 -
Bva06g01227 643 Pfam E motif 452 514 IPR046848 -
Bva06g01227 643 Gene3D Tetratricopeptide repeat domain 232 288 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01227 Bva-Chr6 9492167 9494098 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01227 86 643 Glycoside Hydrolase AT3G49170 35.644 3.24e-122 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01227 - - lja:Lj4g3v1632020.2 1021.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01227 06 9492167 9494098 Bva06g01227 06 9492167 9494098 ECH