Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01110 ATGAAAGTTCGATCGGTGAAGCTGAGGGAAGCCCACAAGGCTGCGCCAAATGGCCGCCCTTCCTTCTGCTCCATCTTGTGGGACCAACAAGCTCAACATCTCGTTACCGCCTCCGCTTCCGATGTCTCCATTTCCATTCATGACCCTCTCCTTCCTTCAGGTGCCCCGAGGATCCTCCGCCACCATCGTGATGGTGTTACCGCTCTGGCCATTAGCCCTAATTCCACTTGTCTTGCATCCGGATCCATCGATCACTCCGTTAAGCTCTACAAGTTCCCAGGTGGAGAGTTCCAGACTAATATTACCAGGTTTACACTTCCAATACGTTCCCTAGCATTTAATAAATCAGGGAGTATGTTGGCAGCTGCTGGTGACGATGAGGGcattaaacttattaatacaATAGATGGTTCTATTGCGAGGGTCCTCAAAGGGCATAAAGGGTCTATCACTGGCTTAGCATTCGATCCCAATGGTGAATACTTAGCATCTACAGATTCGACAGGAACTGTGATTTTCTGGGAACTCCAGTCCGGAAGAACTATTCATAATCTTAAAGGCATTGCTCCTGATGTTGGAGCATATGTTTCTGCTATGAACGTTCTTTGCTGGAGTCCTGATGGTGAGACCTTAGCTGTTCCAGGGTTGAGAAATGATGTAGTTATGTATGATAGAGACACGGCTGAAAAGTTGTTTTCATTGAGAGGTGATCACATACAACCAATATGTTTCTTGTCTTGGTCACCCAATGGCAAGTACATCGCTACTTCTGGTTTAGATAGGCAGGTTCTAATCTGGGATGTTAATAAGAAGCAGGACATAGATAGacaaaaatttgatgaaagaATATGTTGCATGGCTTGGAAGCCAATTGGCAATGCTTTAGCCGTTATTGATGATTTGGGAAAGTATGGTATCTGGGATTCTGTTATTCCTTCATCTATGAAATCTCCAACAGAGGATATCCCTGTACAATCTAAAAATAGTAATGGGCTACTTCTGTTTGATGAGGAGGATGAGGATCCAGACATTAGTGTAAGTGGAAGTTTAAGTTATCTTGGTGAAGATAGCAATGGTGAATCCGAACCACCAAGCAGGAAAAGATTGCGCAAACAGATGTTGAGTGTGGAAAATCTGGATGAGGATGGCAGTgatgaaatgattttatatccaAAGATTGAGTCTTATAAAAAGCTAATTCACAcgcagaaagaaaatttgggaCTGAGAAGCACAATGACAACATCCAATTCAAAAATGCAGGAGGCGTTTCAGCCAGGATCTACTCCTGTGCAGCTTGGTAAAAGGCGCTTTTTATGCTACAACATGCTTGGAAGTATAACCTCAGTTGAACACGATGGATACTCCCACATAGAGATCGATTTTCATGATACTGGCAGCGGTCCACGAGTTCCATCAATGACTGATCATTTTGGATTTACAATGGCTGCATTAAATGAGAATGGAAGTGTCTTTGCAAATCCTTGCAAGGGCGAGAAGAACATGAGTACCCTCATGTATCGTCCATTTAGTAGCTGGGCAAATAATAGCGAGTGGTCTATGCGCtttgaaagagaagaagtGAAGGTTGTTGCACTTGGTACTGCTTGGGTAGCTGCAGTAACTAGTTTCAATTATCTTCGGATCTTTACCGAGGGTGGTTTGCAGAAACATGTTATTTCTTTGAACGGGCCAGTGGTCACTGCATCAGGTTTCAAGGATAAACTAGCGGTTGTCACTCATGCCTCTGATTGCCTTCCCTCAAATGATCAGGTGCTAGAGTTTAGAGTATTTGACATACTTAATGGGACCCAACCCCTTCTAGGGCGCTTGCCATTAACTCCCGGTTCATCTCTAACATGGTTTGGATTTAGCGAAGAAGGCGAACTGAGTTCTTATGATTCTAAGGGTGTGTTAAGGGTTTTCACTAGCCAATACGGTGGAAGTTGGCTCCCACTCTTCAGTAGTAATAAAGAGAAGTCTGATGAAAACTATTGGGTAGTGGGGTTGAATGCAAGCAAGTTATTTTGTGTGATTTGCAAAAATCCCGAAATCTTCCCACAGGTGATACCCAAGCCAGTACTCACTCTATTGAATCTTTCATTTCCTCTTGCTTCCTCGGATCTGGGATCAGAAGCCCTTGAAAACGAGTTTATAATGAATAGCATGCGTCTTTTTGAGATTCAGAAAAGATTGGAAGAAATGGATAGTGCTGGTTTTGAAACCAGTTCACTTGATGACGAGGCTTTCAATTTGGAAACTGCACAAGACAGATGCATACTTCGGCTTATTGGATCATGCTGCAATGGTGATAAGTTAGAGAGAGCCACTGAACTCGTGAAGCTTCTATCACtggaaaaatcaatgaaaGGCGCAATAAAACTTGTTACTGCTCTGAAGCTTCCTAACTTAGCTGAAAGGTTCAGTAACATATTGGAGGAAAGGTTGctgcatgaaaaaaataaaactagtaAAACAAGCCTCCCACACAACCGTCCTGCATCTCTTACAGCTGATGTTCCACTTAGCAGAAGCAAAGTCCCATATCTGACCGAAGCATCGGAAACAGTTGGTTTTTCCTCATCTCCAAAACTATCTGCACCTTTATTCACGAAGAAAGTCAAAAGACAAGAGGAAGCTAAAGCTGGAACTGCTGTAATGAATGAAACTATGAAGGTAAAGCATACAGGGGATGATATAAGTGATAGGGAGGGGAAGAAGGTAGGGGAAATGCGTCAGGGGCAAGATGGTTCTATAAAGCCATCAAATAATCAGCAACTTAACAATTTAGAGGCCAGTACGGCACAATCAAGTCGCCCCTCCAATCCATTTTTAAAGTCATCTATCAAATG 2852 0.4151 MKVRSVKLREAHKAAPNGRPSFCSILWDQQAQHLVTASASDVSISIHDPLLPSGAPRILRHHRDGVTALAISPNSTCLASGSIDHSVKLYKFPGGEFQTNITRFTLPIRSLAFNKSGSMLAAAGDDEGIKLINTIDGSIARVLKGHKGSITGLAFDPNGEYLASTDSTGTVIFWELQSGRTIHNLKGIAPDVGAYVSAMNVLCWSPDGETLAVPGLRNDVVMYDRDTAEKLFSLRGDHIQPICFLSWSPNGKYIATSGLDRQVLIWDVNKKQDIDRQKFDERICCMAWKPIGNALAVIDDLGKYGIWDSVIPSSMKSPTEDIPVQSKNSNGLLLFDEEDEDPDISVSGSLSYLGEDSNGESEPPSRKRLRKQMLSVENLDEDGSDEMILYPKIESYKKLIHTQKENLGLRSTMTTSNSKMQEAFQPGSTPVQLGKRRFLCYNMLGSITSVEHDGYSHIEIDFHDTGSGPRVPSMTDHFGFTMAALNENGSVFANPCKGEKNMSTLMYRPFSSWANNSEWSMRFEREEVKVVALGTAWVAAVTSFNYLRIFTEGGLQKHVISLNGPVVTASGFKDKLAVVTHASDCLPSNDQVLEFRVFDILNGTQPLLGRLPLTPGSSLTWFGFSEEGELSSYDSKGVLRVFTSQYGGSWLPLFSSNKEKSDENYWVVGLNASKLFCVICKNPEIFPQVIPKPVLTLLNLSFPLASSDLGSEALENEFIMNSMRLFEIQKRLEEMDSAGFETSSLDDEAFNLETAQDRCILRLIGSCCNGDKLERATELVKLLSLEKSMKGAIKLVTALKLPNLAERFSNILEERLLHEKNKTSKTSLPHNRPASLTADVPLSRSKVPYLTEASETVGFSSSPKLSAPLFTKKVKRQEEAKAGTAVMNETMKVKHTGDDISDREGKKVGEMRQGQDGSIKPSNNQQLNNLEASTAQSSRPSNPFLKSSIK 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01110 950 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 91 - -
Bva06g01110 950 Gene3D - 193 309 IPR015943 GO:0005515
Bva06g01110 950 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 143 180 - -
Bva06g01110 950 MobiDBLite consensus disorder prediction 892 913 - -
Bva06g01110 950 Pfam Minichromosome loss protein, Mcl1, middle region 423 704 IPR022100 -
Bva06g01110 950 ProSitePatterns Trp-Asp (WD) repeats signature. 254 268 IPR019775 -
Bva06g01110 950 MobiDBLite consensus disorder prediction 878 950 - -
Bva06g01110 950 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Bva06g01110 950 SUPERFAMILY WD40 repeat-like 23 308 IPR036322 GO:0005515
Bva06g01110 950 SMART WD40_4 178 224 IPR001680 GO:0005515
Bva06g01110 950 SMART WD40_4 270 308 IPR001680 GO:0005515
Bva06g01110 950 SMART WD40_4 52 91 IPR001680 GO:0005515
Bva06g01110 950 SMART WD40_4 2 48 IPR001680 GO:0005515
Bva06g01110 950 SMART WD40_4 94 133 IPR001680 GO:0005515
Bva06g01110 950 SMART WD40_4 227 267 IPR001680 GO:0005515
Bva06g01110 950 SMART WD40_4 136 175 IPR001680 GO:0005515
Bva06g01110 950 MobiDBLite consensus disorder prediction 916 950 - -
Bva06g01110 950 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 184 IPR001680 GO:0005515
Bva06g01110 950 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 276 IPR001680 GO:0005515
Bva06g01110 950 Gene3D - 7 192 IPR015943 GO:0005515
Bva06g01110 950 Pfam WD domain, G-beta repeat 231 267 IPR001680 GO:0005515
Bva06g01110 950 Pfam WD domain, G-beta repeat 141 174 IPR001680 GO:0005515
Bva06g01110 950 Pfam WD domain, G-beta repeat 57 90 IPR001680 GO:0005515
Bva06g01110 950 CDD WD40 27 297 - -
Bva06g01110 950 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 938 - -
Bva06g01110 950 MobiDBLite consensus disorder prediction 346 368 - -
Bva06g01110 950 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 235 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01110 Bva-Chr6 8857155 8862807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01110 62 295 Miscellaneous Gene Families AT5G08390 26.695 4.62e-16 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01110 K11274 - qsu:112010612 1443.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01110 06 8857155 8862807 Bva06g01110 06 8857155 8862807 ECH