Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01098 ATGCCTACTGTTAGCGTTGGGCGGGATCGTCTGTATGCAGCACTGAAAAGACAATACTCACAAGAGGAGTTCGAAGATTTATGCTTCAGTTATGGGATCGAGCTCGACGACGTCACTACAGAGAAAGCAattgtaagaaaagaaaaacacttggAAGAAGAGTCTGATGAAGACGAAGAAGTTATCTTCAAAATCGAAGTTCCCGCCAATAGATATGACCTGCTCTGCCTTGAAGGACTTGCACAAGCGCTCCGAGTTTTCTGTGAAACCCAGGAGATTCCTGCCTACAGGTTAGCTGATATTAGTAAGGACTCGATGCTCAAAATGCATGTGAAGCCAGAGACATCTTTGATTCGTCCATACATTGTTTGTGCCATATTGAGAGGTTTAAAGTTTGATAAAGCAAGATACAACAGCTTTATTGATCTCCAAGACAAGCTTCATCAAAACATTTGCCGGCGAAGAACTCTTGTTGCTATTGGCACACATGATTTGGATACATTGGAAGGTCCTTTCACTTATGAGGCTTTACCACCCTcaagtataaattttacacCACTGAAGCAGGAAAAGAGCTTCAGGGCTGATGAGTTGATGGAGTTCTACAAATCAGATTTGAAACTGAAGAAATTCTTGCACATAATTGAGGACTCACCTGTTTTTCCTGTTATATATGACCGCAAAAGAACTGTTCTATCTTTGCCCCCAATTATCAATGGTGCACATTCAGCCATCACTCTGGAGACAAAGAATGTATTTATTGAATGTACTGCCACTGATCTGACAAAGGCCAAGATTGTTTTGAATACAATGGTAACGACCTTTTCAGAATACTGTGAAAATCAGTTTGTTATTGAACCAGTTGAAGTGATCTCTTCTGATGGaaagtcaaatatatatcCTGATTTATCTGTCTACAATATGGAAGTCTCTCTATCTTACATTACTGGATTGATCGGGGTACCATTGGAGGCAGAAGAGGTCACTGGGCTCTTAAACCGGATGCAATTGAGTGCTAGAAAGTCAGTGTCTGACAATAAACAGTGTAATATCGTTGTATCTGTACCTCCTACTAGAAGTGACATTCTTCACCCATGTGATGTTATGGAGGATGTTGCAATTGCTTATGGATTCAATGCTGTCAAGGATAAAGCCATTGAAGATAATAAGGGCTCAAAGAGATTGGCTGCTTCCTTAACACTACTTCCATTGAATGAACTCAGTGACCTTATCAGGAACGAGGTTGCTACAAGTGGGTTCACGGAGGTCCTGACATTTATACTTTGCTCTTATAAGGAAAACTTTTCCATGCTAAATCGTGAAGATGATAAATCAACAGCCGTTATCATTGGAAACCCGAGGTCTTCTGACTTTGAGGCTGTTCGTACTAGTCTTATGCCTGGCATGTTGAAAACTGTTGCACACAACAAAGACCATGCAAAGCCCATAAAGATTTTTGAAGTTGGTGATATCGCACTCCTGGACGACACAAAAGACGTGGGTGCAAGAAATTGTCGTCAACTTGGTGCACTATATTGTGGTGCCAATGCTGGATTTGAGATAATTCATGGCTTAGTGGACAGAATAATGGAAAAGACtgggatttcttttgtttccccTGGTGATGGAACAGGCTATTATATTGAGCGGTCAGATGAACCCGAGTTTCTTCCTGGTAGACAAGCTAGAATCATTTGTAGAGGAAAGCATATCGGCACTTTTGGCATTGTTCACCCACAGgtGTTAAACAATTTCGACATTCCTGATCCATGCTCCTTTGTAGAACTTAACATTGAAAGTTTCTTATA 1808 0.3938 MPTVSVGRDRLYAALKRQYSQEEFEDLCFSYGIELDDVTTEKAIVRKEKHLEEESDEDEEVIFKIEVPANRYDLLCLEGLAQALRVFCETQEIPAYRLADISKDSMLKMHVKPETSLIRPYIVCAILRGLKFDKARYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLEGPFTYEALPPSSINFTPLKQEKSFRADELMEFYKSDLKLKKFLHIIEDSPVFPVIYDRKRTVLSLPPIINGAHSAITLETKNVFIECTATDLTKAKIVLNTMVTTFSEYCENQFVIEPVEVISSDGKSNIYPDLSVYNMEVSLSYITGLIGVPLEAEEVTGLLNRMQLSARKSVSDNKQCNIVVSVPPTRSDILHPCDVMEDVAIAYGFNAVKDKAIEDNKGSKRLAASLTLLPLNELSDLIRNEVATSGFTEVLTFILCSYKENFSMLNREDDKSTAVIIGNPRSSDFEAVRTSLMPGMLKTVAHNKDHAKPIKIFEVGDIALLDDTKDVGARNCRQLGALYCGANAGFEIIHGLVDRIMEKTGISFVSPGDGTGYYIERSDEPEFLPGRQARIICRGKHIGTFGIVHPQVLNNFDIPDPCSFVELNIESFL 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01098 602 Pfam Phe-tRNA synthetase beta subunit B1 domain 1 88 IPR040659 -
Bva06g01098 602 Pfam Phenylalanyl tRNA synthetase beta chain CLM domain 403 598 IPR041616 -
Bva06g01098 602 ProSiteProfiles B5 domain profile. 303 383 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Bva06g01098 602 Gene3D Bira Bifunctional Protein; Domain 2 402 602 IPR045864 -
Bva06g01098 602 SUPERFAMILY PheT/TilS domain 221 280 - -
Bva06g01098 602 Gene3D - 100 304 IPR020825 -
Bva06g01098 602 CDD PheRS_beta_core 403 601 IPR041616 -
Bva06g01098 602 SUPERFAMILY Putative DNA-binding domain 5 93 IPR009061 -
Bva06g01098 602 TIGRFAM pheT_arch: phenylalanine--tRNA ligase, beta subunit 22 602 IPR004531 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Bva06g01098 602 Gene3D - 306 381 - -
Bva06g01098 602 Gene3D - 1 88 - -
Bva06g01098 602 PANTHER PHENYLALANINE--TRNA LIGASE BETA SUBUNIT 1 602 - -
Bva06g01098 602 PANTHER PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 1 602 IPR045060 GO:0004826|GO:0006432
Bva06g01098 602 Pfam tRNA synthetase B5 domain 308 378 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Bva06g01098 602 SUPERFAMILY Putative DNA-binding domain 307 382 IPR009061 -
Bva06g01098 602 SMART B3_4_2 118 280 IPR005146 GO:0003723|GO:0004826
Bva06g01098 602 SUPERFAMILY Class II aaRS and biotin synthetases 375 601 IPR045864 -
Bva06g01098 602 SMART B5_2 305 378 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Bva06g01098 602 Pfam B3/4 domain 119 280 IPR005146 GO:0003723|GO:0004826
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01098 K01890 - gmx:100805249 1061.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01098 06 8801208 8808283 Bva06g01098 06 8801208 8808283 ECH