Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01049 ATGGCTTGTCTTCCTTTTGCACCGACTACTAACccacatttttcttatttgaaacCCTACAGTTCCAGAAGTTCTTTCGCAACAAAGCAATTTGTAAAACTTAAAGATGGTAATGATGGCAGAAGTCATCAGAACTTGTACAAATCTGACTTCGATGACGTGTCTTCATTATGCAAAGATGGGAAAATTCGGCAAGCTGTTAACTTGCTCGCGGAAATGCAATCCGGAGATCTCCATATTGGACATGATATTTATGGAGAACTTCTTCAGGGATGCGTTTATGAACGAGCTCTGTTGGTGGGTCGGCAAATTCATGctcaaatcattaaaaaaggAGATGCCTTTGCGGGGAATGAGTACATTGAGACTAAGTTGGTGATTTTCTATGCGAAATGTGACGTCTTGGAGGTATCCAATCGATTATTTCGCAGACTACAGAAACAGAACGTGTTCTCTTGGGCTGCCATGATTGGATTGCACTCTCGGATGGGTTTCTATGAGGAGTCTTTGTTGAATTATTGTGAAATGCTCGAAAACGGATTTTTGCCGGATAATTTTGTCGTCCCCAATGCGTTAAAGGCGTGTGGTGCTCTGCAATGGGTTGGCTTtggcaagggaattcatggcTATGTAGTGAAGATGATGGGCTTCGGGGACTGTGTTTTTGTTGCTAGTAGTCTCGTGGATATGTATGGAAAATGTGGATTTTTGGAGGATGCAGAAAGGGTGTTCGATGTTATGCCCGAGAAGACCGTCGTAGCGTGGAATTCTATGATTGTGGCTTATGCGCAGAATGGGCTGAACgaggaggcaatcaagctATTTTACTGCATGCGAGTAGAAGGAGTAGAACCAACTCGAGTCACATTGTCAGTCTTCCTTTCTGCATCTGCTAATTTAGAGGCCCTGGGAGAGGGTAGACAAGGGCACGCTCTCGCAGTTCTGGGTGGATTAGAGTTAGACAGCATTTTGGGTAGCTCCATCTTAAACTTCTATTCCAAGGTTAGTTTGATCGAGGATGCTGAACTAGTTTTTAGCAACATGGTCGAGAAGGATGTGGTTACCTGGAATTTAATCATATCTAGTTACGTACAATTTGGGCAGTTTGAGAAGGCGCTTCACATTTGCCATTCCatgagagaagaaaacttAAGGTTTGACTGTGTGACTCTCTCTTCATTATTGACCGTTGCTGCAGATACAAGAAATTTAGAACTTGGTATGAAGGGACATTGCTTTTGCATTAAAAACAAGTTTGAGTCTGATGTTGTTGTTTCAAGTGGTATAATTGATATCTATGCAAAATGTGGGAGGATGAACTATGCAAGAAGAGTTTTCAACTCTACCACAAAGAGAGATATTGTGTTATGGAATACAATATTGGCTGCTTATGCAGAGCTAGGGCTGAGTGGTGAGGCCTTGAAATTGTTCTATCAAATGCAGCTGGAGAGCGTCCCACCAAATGTGATTTCATGGAATTCTGTAATCTTGGGTTTTCTCAGAAATGGTCAAGTTATTGGGGctcaaaaaatgttttcagaAATGTGCTCCCTCGACGTTCAGCCTAACCTGATTACATGGAATACTCTAATATCTGGTCTGTCTCAGAATGGTCATGGTTATGAAGCTATTTTGATTTTCCGGCAAATGCAGGAAGCAAACATTAAACCTGATAGCATGAGTCTAACATCAGCACTCAGAGCATGTACAAATAtgatatcattaaaatatggAAGAGCAATACATGGATATCTTATAAGGCATGACGTTTCTTCGTCTATTCATATTGCAACCTCTATAATGGACATGTATGCTAAATGTGGAACCATAGATAATGCGAAGAGAGTTTTTATGTTGTGTTCAAGGAAGGAATTGCCTGTCTACAACGTAATGATCTCTGCTTATGCATCACATGGTCAAGCTACAGAAGCTCTTGCATTGTTTAGACAATTAAAGAAGGAAGGAATACAGCCAGATCACATAACTCTGACTAGTGTCTTGTCAGCATGCAGCCATGGGGGATTAGTGAAGGAAGGTATAGAGCTTTTCGACTATATGGTCTCTGAACTCCAAATGAAGCCAGGTCCAGAGCACTATGgttgtttaattaaacttCTTTCTAACTATGGCAAATTGGATGAAGCTTTGAGGATTATTCTGGCTATGCCAAGCCATCCTGATGCACATATCTTAGGATCTCTGCTTGTGGCTTGTAGGCAAAACCATGAGCTTGAACTTGCAGATTACATAGCAAGATGGCTATTAAAATTGGAGCCCGATAATTCTGGAAACTATGTGGCTCTTTCAAATGTTTATGCAACTGCAGGAAGATGGGATAAGGTATCATATATAAGGGgcataatgaaagaaaagggCCTGAGAAAAATTCCTGGATGCAGCTGGATCGAAGTTGGACAAGAAGTAAATGTTTTTGTTGCAGGTGATAGATCACACCCCAAAACAGAGGAAATTTATAAACTGTTGGATTTATTGGGAATGGAAATGAATTCTGTAAGATATGTTCCTCATAGTGCTGAGGCAAAATCATGTGTTTCAATACAAGTTTCTAGACTTGTGTG 2579 0.3866 MACLPFAPTTNPHFSYLKPYSSRSSFATKQFVKLKDGNDGRSHQNLYKSDFDDVSSLCKDGKIRQAVNLLAEMQSGDLHIGHDIYGELLQGCVYERALLVGRQIHAQIIKKGDAFAGNEYIETKLVIFYAKCDVLEVSNRLFRRLQKQNVFSWAAMIGLHSRMGFYEESLLNYCEMLENGFLPDNFVVPNALKACGALQWVGFGKGIHGYVVKMMGFGDCVFVASSLVDMYGKCGFLEDAERVFDVMPEKTVVAWNSMIVAYAQNGLNEEAIKLFYCMRVEGVEPTRVTLSVFLSASANLEALGEGRQGHALAVLGGLELDSILGSSILNFYSKVSLIEDAELVFSNMVEKDVVTWNLIISSYVQFGQFEKALHICHSMREENLRFDCVTLSSLLTVAADTRNLELGMKGHCFCIKNKFESDVVVSSGIIDIYAKCGRMNYARRVFNSTTKRDIVLWNTILAAYAELGLSGEALKLFYQMQLESVPPNVISWNSVILGFLRNGQVIGAQKMFSEMCSLDVQPNLITWNTLISGLSQNGHGYEAILIFRQMQEANIKPDSMSLTSALRACTNMISLKYGRAIHGYLIRHDVSSSIHIATSIMDMYAKCGTIDNAKRVFMLCSRKELPVYNVMISAYASHGQATEALALFRQLKKEGIQPDHITLTSVLSACSHGGLVKEGIELFDYMVSELQMKPGPEHYGCLIKLLSNYGKLDEALRIILAMPSHPDAHILGSLLVACRQNHELELADYIARWLLKLEPDNSGNYVALSNVYATAGRWDKVSYIRGIMKEKGLRKIPGCSWIEVGQEVNVFVAGDRSHPKTEEIYKLLDLLGMEMNSVRYVPHSAEAKSCVSIQVSRLV 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01049 859 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 488 522 IPR002885 -
Bva06g01049 859 PANTHER OS07G0578800 PROTEIN-RELATED 535 824 IPR045215 GO:0003723|GO:0009451
Bva06g01049 859 PANTHER OS07G0578800 PROTEIN-RELATED 367 539 IPR045215 GO:0003723|GO:0009451
Bva06g01049 859 Pfam PPR repeat 151 181 IPR002885 -
Bva06g01049 859 Pfam PPR repeat 455 482 IPR002885 -
Bva06g01049 859 Pfam PPR repeat 490 518 IPR002885 -
Bva06g01049 859 Pfam PPR repeat 55 75 IPR002885 -
Bva06g01049 859 Pfam PPR repeat 698 723 IPR002885 -
Bva06g01049 859 TIGRFAM PPR: pentatricopeptide repeat domain 627 659 IPR002885 -
Bva06g01049 859 TIGRFAM PPR: pentatricopeptide repeat domain 490 523 IPR002885 -
Bva06g01049 859 TIGRFAM PPR: pentatricopeptide repeat domain 455 489 IPR002885 -
Bva06g01049 859 TIGRFAM PPR: pentatricopeptide repeat domain 354 387 IPR002885 -
Bva06g01049 859 TIGRFAM PPR: pentatricopeptide repeat domain 253 286 IPR002885 -
Bva06g01049 859 TIGRFAM PPR: pentatricopeptide repeat domain 525 559 IPR002885 -
Bva06g01049 859 Pfam E motif 743 803 IPR046848 -
Bva06g01049 859 Pfam PPR repeat family 351 396 IPR002885 -
Bva06g01049 859 Pfam PPR repeat family 627 671 IPR002885 -
Bva06g01049 859 Pfam PPR repeat family 522 569 IPR002885 -
Bva06g01049 859 Pfam PPR repeat family 250 296 IPR002885 -
Bva06g01049 859 Gene3D Tetratricopeptide repeat domain 597 818 IPR011990 GO:0005515
Bva06g01049 859 Gene3D Tetratricopeptide repeat domain 303 421 IPR011990 GO:0005515
Bva06g01049 859 Gene3D Tetratricopeptide repeat domain 427 576 IPR011990 GO:0005515
Bva06g01049 859 Gene3D Tetratricopeptide repeat domain 52 203 IPR011990 GO:0005515
Bva06g01049 859 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 535 824 - -
Bva06g01049 859 Pfam E+ motif 811 829 IPR046849 -
Bva06g01049 859 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Bva06g01049 859 PANTHER OS07G0578800 PROTEIN-RELATED 49 350 IPR045215 GO:0003723|GO:0009451
Bva06g01049 859 PANTHER OS07G0578800 PROTEIN-RELATED 351 405 IPR045215 GO:0003723|GO:0009451
Bva06g01049 859 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 49 350 - -
Bva06g01049 859 SUPERFAMILY TPR-like 625 783 IPR011990 GO:0005515
Bva06g01049 859 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Bva06g01049 859 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Bva06g01049 859 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 523 557 IPR002885 -
Bva06g01049 859 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Bva06g01049 859 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 351 405 - -
Bva06g01049 859 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 367 539 - -
Bva06g01049 859 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 624 658 IPR002885 -
Bva06g01049 859 Gene3D Tetratricopeptide repeat domain 207 302 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01049 Bva-Chr6 8546182 8550221 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01049 176 844 Glycoside Hydrolase AT3G49170 31.049 4.61e-111 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01049 - - cam:101507631 1152.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01049 06 8546182 8550221 Bva06g01049 06 8546182 8550221 ECH