Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00694 ATGGAGGGTACCCTTTTCCCTAACAGGCCAATTTATTCCGTCCCTGCAAACAGACCAACCCATCTGAACTCCACCGTGAAATTCAATTCAACGTTGCTGCCACCGCCTCCTCCTCTTCCTCACTCTCCGCCTCCTCCTTCATTTCATTTGGATTCGCTCCTCCAACACCTTCAGCGCCTCTCTGCAACTCCCATCACCACTAACAAGCCGACGCTTGATAGTCCATTTCAGGAAAGAATTGCCCATTTTCCCCTTGATTCAGCCGGACTACAGCACCAACAAGCCCCTAGAAAGAGACCCACTTCAGTTTCGGTCCCGCGAATTGATGGCAGCGAAACGAAGGTTAAGACTGAGGAGAGTTATCTTGAGTTTTTATCCACCGGGGGTAAGTTGATGCTCAATTCAATTGTGGAAACGCCTTTGCATAGTTTAAATGACTTCTTCAACTCTGCCGAGTTTGAGTTGCTCGAAATTGATTTTCCCAGCCTCTTGAAAGCGCTAGACTTATCAGGCAATTGGGAAAGAGCCATTTTGTTGTTTGAATGGGTTGCATTGCGTTTAAAATCCGAAAATTTGAGGCTAGACAACCAGGTCGTTGAAATTATGGTTAGAATCCTGGGGAGAGAATCACAGCATTCAATTGCATCCAAGCTGTTTGAAATAATTCCTCTTGAAGATTATTCACTTGATGTCCGGGCCTACACGACTATTCTTCACGCATATGCTCGCACGGGTAAGTATAAACGAGCTATTGCTATCtttgagaaaatgaaggagATTGGTCTTTCTCCAACTTTGGTTACTTTCAACGTTATGCTTGATGTTTATGGCAAAATGGGTCGTTCCTGGAACACAATCTTAGGCCTCTTGAATGAGATGAGAAGTAAAGGACTTGAATTTGATGAGTTCACATGCAGCACAGTGATATCTGCTTGTGGAAGAGAGGGTATGCTAGATGaagcaagaaaattttttgcCGAGTTAAAATTGACTGGCTATAAACCAGGAACTGTAACCTATAACTCTTTGTTGCAAGTATATGGGAAAGTGGGGATCTATACAGAGGCCTTGAGCatcttaaaagaaatggagGACAATAATTGCCCACCTGATTCTGTTACTTACAACGAACTTGTGGCAGCATATGCAAGAGCTGGATTTTATGATGAAGGAGCTGTTGTCATAGATACAATGACCCAGAAAGGAGTAATGCCAAATGCTGTTACTTATACCACTGTAATAAATGCCTATGGGAAGGCAAGAAAGGAGGATAAGGCCCTAAAGTTGTTCAACCAGATGAAGGAGTTGGGTTGTTTTCCAAATGTATGTACGTACAATTCTATTCTTGGGATGCTGGGCAAGAAGTCAAGATCAGAGGATATGATAAGGATTCTCTGTGATATGAAATTGAATGGATGTGCTCCAAATCGAATTACATGGAATACCGTGCTTGCTGTATGTGGTGAGAAGGGTAACCACAAGTATGTGAACCAGGTTTTAAGGGAAATGAAGAACTGTGGATTTGAGCCTGACAGAGATACGTTCAATACACTAATTAGTGCATATGGTCGGTGTGGGTCTGAAATTGATGCTGCAAAAATGTACGAGGAAATGGTTAAAGCAGGCTTTACTCCATGTGTAACAACTTATAATGCTCTTCTAAATGCTCTAGCTCGGCGAGGTGATTGGAAAGCGGCAGAATCTGTCATTCTAGACATGAGGAAAAAGGGCTTCAAGCCTAATGAAACGTCATGCTCACTGATGCTCCATTGTTATTCTAAAGGTGGGAATGTCAAGGGAATAGAGAAGattgagaaagaaatttatgatGGTCATGTCTTCCCGAGTTGGATGCTCTTGAGAACCCTTGTCATTGCAAACTTCAAGTGCCGAAAGCTTAGAGGAATGGAGAGGGCATTTCAGCAGTTGCAAAAGAATGGCTACAAACCTGATTTGGTCCTAATTAACTCCATGCTTTCTATGTTCATCAGAAATAAGATGTATAACAGGGCCTATGAAATGTTGCATTTTATCCATAAATGTGGGCTAGAGCCGGATCTCATCACCTATAATAGCTTAATGGACATGTATGCCCGAGGTGGTGAGTGTTGGAAAGCAGAAGAAGTGCTGAAGGGAGTTCAAAAATCTGGTCAAAAGCCTGATCTTGTGTCTTATAACACTGTCATCAAGGGATTTTGCAGGCAAGGGCTAATGCAGGAGGCTATTAGAATTCTCTCAGAGATGACCACCAATGGTATTCGACCATGCATTTTTACATACAATACTTTCTTGGCAGGCTATGTGAAGCTGGGTTTGTTTACAGAGGTAGATGAAGTTATTAGATATATGATTGAGCACAATTGCAGGCCCAATGAGCTAAGTTACAAGATTGTAGTTGATGGTTATCGTAAAGCAAGGAAATATGACGAAGCCATGGACTTCGTCTCTAAGATTAAAGACATTGATGGTTCTATTGATGATCAAACTGTGAAAAGGCTTAGGGAGAGTTTGGAATCatg 2519 0.4121 MEGTLFPNRPIYSVPANRPTHLNSTVKFNSTLLPPPPPLPHSPPPPSFHLDSLLQHLQRLSATPITTNKPTLDSPFQERIAHFPLDSAGLQHQQAPRKRPTSVSVPRIDGSETKVKTEESYLEFLSTGGKLMLNSIVETPLHSLNDFFNSAEFELLEIDFPSLLKALDLSGNWERAILLFEWVALRLKSENLRLDNQVVEIMVRILGRESQHSIASKLFEIIPLEDYSLDVRAYTTILHAYARTGKYKRAIAIFEKMKEIGLSPTLVTFNVMLDVYGKMGRSWNTILGLLNEMRSKGLEFDEFTCSTVISACGREGMLDEARKFFAELKLTGYKPGTVTYNSLLQVYGKVGIYTEALSILKEMEDNNCPPDSVTYNELVAAYARAGFYDEGAVVIDTMTQKGVMPNAVTYTTVINAYGKARKEDKALKLFNQMKELGCFPNVCTYNSILGMLGKKSRSEDMIRILCDMKLNGCAPNRITWNTVLAVCGEKGNHKYVNQVLREMKNCGFEPDRDTFNTLISAYGRCGSEIDAAKMYEEMVKAGFTPCVTTYNALLNALARRGDWKAAESVILDMRKKGFKPNETSCSLMLHCYSKGGNVKGIEKIEKEIYDGHVFPSWMLLRTLVIANFKCRKLRGMERAFQQLQKNGYKPDLVLINSMLSMFIRNKMYNRAYEMLHFIHKCGLEPDLITYNSLMDMYARGGECWKAEEVLKGVQKSGQKPDLVSYNTVIKGFCRQGLMQEAIRILSEMTTNGIRPCIFTYNTFLAGYVKLGLFTEVDEVIRYMIEHNCRPNELSYKIVVDGYRKARKYDEAMDFVSKIKDIDGSIDDQTVKRLRESLES 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00694 839 TIGRFAM PPR: pentatricopeptide repeat domain 338 372 IPR002885 -
Bva06g00694 839 TIGRFAM PPR: pentatricopeptide repeat domain 688 721 IPR002885 -
Bva06g00694 839 TIGRFAM PPR: pentatricopeptide repeat domain 514 545 IPR002885 -
Bva06g00694 839 TIGRFAM PPR: pentatricopeptide repeat domain 303 336 IPR002885 -
Bva06g00694 839 TIGRFAM PPR: pentatricopeptide repeat domain 549 582 IPR002885 -
Bva06g00694 839 TIGRFAM PPR: pentatricopeptide repeat domain 373 407 IPR002885 -
Bva06g00694 839 TIGRFAM PPR: pentatricopeptide repeat domain 723 755 IPR002885 -
Bva06g00694 839 TIGRFAM PPR: pentatricopeptide repeat domain 758 792 IPR002885 -
Bva06g00694 839 TIGRFAM PPR: pentatricopeptide repeat domain 478 511 IPR002885 -
Bva06g00694 839 TIGRFAM PPR: pentatricopeptide repeat domain 408 442 IPR002885 -
Bva06g00694 839 TIGRFAM PPR: pentatricopeptide repeat domain 233 265 IPR002885 -
Bva06g00694 839 TIGRFAM PPR: pentatricopeptide repeat domain 443 476 IPR002885 -
Bva06g00694 839 TIGRFAM PPR: pentatricopeptide repeat domain 655 686 IPR002885 -
Bva06g00694 839 TIGRFAM PPR: pentatricopeptide repeat domain 267 301 IPR002885 -
Bva06g00694 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 476 510 IPR002885 -
Bva06g00694 839 MobiDBLite consensus disorder prediction 31 47 - -
Bva06g00694 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Bva06g00694 839 MobiDBLite consensus disorder prediction 88 107 - -
Bva06g00694 839 Pfam PPR repeat 717 749 IPR002885 -
Bva06g00694 839 SUPERFAMILY HCP-like 231 437 - -
Bva06g00694 839 Pfam Pentatricopeptide repeat domain 228 279 IPR002885 -
Bva06g00694 839 Pfam Pentatricopeptide repeat domain 394 454 IPR002885 -
Bva06g00694 839 Pfam Pentatricopeptide repeat domain 463 523 IPR002885 -
Bva06g00694 839 Pfam PPR repeat 303 329 IPR002885 -
Bva06g00694 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Bva06g00694 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 651 685 IPR002885 -
Bva06g00694 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 441 475 IPR002885 -
Bva06g00694 839 Pfam PPR repeat family 650 699 IPR002885 -
Bva06g00694 839 Pfam PPR repeat family 755 802 IPR002885 -
Bva06g00694 839 Pfam PPR repeat family 335 383 IPR002885 -
Bva06g00694 839 Pfam PPR repeat family 545 593 IPR002885 -
Bva06g00694 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 300 IPR002885 -
Bva06g00694 839 PANTHER - 1 834 - -
Bva06g00694 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 721 755 IPR002885 -
Bva06g00694 839 Gene3D Tetratricopeptide repeat domain 628 750 IPR011990 GO:0005515
Bva06g00694 839 Gene3D Tetratricopeptide repeat domain 397 467 IPR011990 GO:0005515
Bva06g00694 839 Gene3D Tetratricopeptide repeat domain 751 822 IPR011990 GO:0005515
Bva06g00694 839 Gene3D Tetratricopeptide repeat domain 284 396 IPR011990 GO:0005515
Bva06g00694 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Bva06g00694 839 Gene3D Tetratricopeptide repeat domain 134 283 IPR011990 GO:0005515
Bva06g00694 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 546 580 IPR002885 -
Bva06g00694 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Bva06g00694 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 756 790 IPR002885 -
Bva06g00694 839 PANTHER OS03G0856100 PROTEIN 1 834 - -
Bva06g00694 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 686 720 IPR002885 -
Bva06g00694 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Bva06g00694 839 MobiDBLite consensus disorder prediction 30 49 - -
Bva06g00694 839 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 511 545 IPR002885 -
Bva06g00694 839 Gene3D Tetratricopeptide repeat domain 468 624 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00694 Bva-Chr6 6694706 6697688 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00694 498 836 Glycosyltransferase AT1G05670 23.235 1.36e-29 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00694 K17710 - tcc:18589279 1263.06