Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00692 ATGGAAGCACCATCGGAGCCAACGGCTCCGGCCGCCGGCGAGGTTATAAGCAAGAATGCTTTGAAGCGGGAGCTCAAGAACAAACAGAGAGAAGAGGAAAGGAAGCGCAAGGAGGAGGAGAAGGCTAAGAAGGCAGCCGAAATGCAATCAAAGAAAGCTGCCACAGGTGAAGATGAAGATATGGACCCAACGCAATACCATGAAAATAGGCTAAAGTATCTTGTAGCTCAGAAGGCAGATGGAAGAAACCCATATCCTCACAAATTCTTTACCTCTATGACTATTAATGagtatattgaaaaatataaaggattAAGCGATGGGGAGCACCTTGAGGATGTGTCTGTGTCATTAGCTGGCCGAATCATGAACAAACGTTCCTCAGGTGGGAAGCTGTGGTTCTATGACCTACATGGCAGTGGGTATAAACTTCAAGTCATGGCAGATGCAAGCAAGTCTGATTTGGATGAGGCTGAATTTTCAAAGTTCCATGCTAATGTCAAGCGTGGTGATATAGTTGGCGTTACTGGATTTCCAGGGAAAAGTAAGAAGGGGGAACTTAGCATCTTCCCCAAGACTTTTGTAGTGTTGTCTCATTGTCTGCATATGATGCCAAGGCAAAAGTCTGGTGCTGCTGCTGATCTGCAGAAAAATGTATGGGTACCAGGAAGTACCAGGAATCCTGAAATTTACATCTTAAAGGATCAGGAAACAAGATATCGGTTACGCCATTTGGATTTGATGCTGAATCCAGAGGTTCGAGAAATATTCAAGACCAGGAGTAAAATCATTTCTTACATTAGGAGGTTCCTTGATGACCTTGATTTCTTGGAGGTTGAAACACCTATGATGAATATGATTGCTGGTGGAGCAGCAGCACGTCCTTTTGTAACTCATCACAATGAACTTAACATGAGATTATTCATGCGAATTGCTCCAGAACTCTATCTTAAGGAACTAGTTGTTGGTGGGCTGGACCGTGTTTATGAAATTGGAAAACAATTTAGAAATGAGGGGATCGATTTGACACACAATCCTGAGTTCACTACCTGCGAGTTCTATATGGCTTATAAAGACTACAATGACCTTATGGAGATTACAGAGCAAATGTTGAGTGGGATGGCCAAGGAACTTACTAAGGGCagctataaaataaaataccatGCAAATGGAATTGATAAGGATCCGATTGAGATCGACTTTACTCCACCTTTCAGAAGGATTGACATGATAGAGGAATTAGAGAAGATGGCAGGCCTCAGTATTCCCAAGGACTTATCCAGTGAGGAAGCTAATCAATATCTTAAAGATGCATGTTTGAAGCATGACATCAAGTGCCCTCCACCTGAGACAACGGCAAGATTGTTGGACAaaCTTGTGGGGCACTTTTTGGAAGAAACATGTGTGAATCCTACCTTCATCATAAACCATCCTGAGATAATGAGTCCATTGGCTAAGTGGCACAGATCAAAACCCGGTCTGACTGAACGTTTTGAATTGTTTGTTAATAAACATGAGCTTTGCAATGCGTATACTGAATTGAATGACCCTGTCGTACAACGTCAGCGATTTGCTGAACAGCTCAAGGATCGGCAATCTGGTGATGATGAAGCAATGGCCTTAGATGAAACATTTTGTACGGCTCTGGAGTATGGTCTTCCACCAACTGGTGGTTGGGGTATGGGTATTGATCGGCTGACTATGTTGCTGACTGATTCACAGAATATTAAGGAAGTTCTCCTCTTCCCTGCCATGAAACCTCAAGATTG 1769 0.4234 MEAPSEPTAPAAGEVISKNALKRELKNKQREEERKRKEEEKAKKAAEMQSKKAATGEDEDMDPTQYHENRLKYLVAQKADGRNPYPHKFFTSMTINEYIEKYKGLSDGEHLEDVSVSLAGRIMNKRSSGGKLWFYDLHGSGYKLQVMADASKSDLDEAEFSKFHANVKRGDIVGVTGFPGKSKKGELSIFPKTFVVLSHCLHMMPRQKSGAAADLQKNVWVPGSTRNPEIYILKDQETRYRLRHLDLMLNPEVREIFKTRSKIISYIRRFLDDLDFLEVETPMMNMIAGGAAARPFVTHHNELNMRLFMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYKDYNDLMEITEQMLSGMAKELTKGSYKIKYHANGIDKDPIEIDFTPPFRRIDMIEELEKMAGLSIPKDLSSEEANQYLKDACLKHDIKCPPPETTARLLDKLVGHFLEETCVNPTFIINHPEIMSPLAKWHRSKPGLTERFELFVNKHELCNAYTELNDPVVQRQRFAEQLKDRQSGDDEAMALDETFCTALEYGLPPTGGWGMGIDRLTMLLTDSQNIKEVLLFPAMKPQD 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00692 589 PIRSF LysRS2 4 589 IPR034762 GO:0004824|GO:0005524|GO:0006430
Bva06g00692 589 MobiDBLite consensus disorder prediction 19 64 - -
Bva06g00692 589 Gene3D - 64 206 IPR012340 -
Bva06g00692 589 TIGRFAM lysS_bact: lysine--tRNA ligase 227 588 IPR002313 GO:0004824|GO:0005524|GO:0006430
Bva06g00692 589 Gene3D Bira Bifunctional Protein; Domain 2 231 589 IPR045864 -
Bva06g00692 589 PRINTS Lysyl-tRNA synthetase signature 317 330 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Bva06g00692 589 PRINTS Lysyl-tRNA synthetase signature 470 486 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Bva06g00692 589 PRINTS Lysyl-tRNA synthetase signature 335 352 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Bva06g00692 589 PRINTS Lysyl-tRNA synthetase signature 288 304 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Bva06g00692 589 PRINTS Lysyl-tRNA synthetase signature 272 282 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Bva06g00692 589 Coils Coil 18 54 - -
Bva06g00692 589 PANTHER LYSINE--TRNA LIGASE 5 589 - -
Bva06g00692 589 SUPERFAMILY Nucleic acid-binding proteins 61 205 IPR012340 -
Bva06g00692 589 Hamap Lysine--tRNA ligase [lysS]. 69 588 IPR002313 GO:0004824|GO:0005524|GO:0006430
Bva06g00692 589 CDD LysRS_core 250 587 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Bva06g00692 589 SUPERFAMILY Class II aaRS and biotin synthetases 235 586 IPR045864 -
Bva06g00692 589 PANTHER LYSYL-TRNA SYNTHETASE 5 589 - -
Bva06g00692 589 CDD LysRS_N 115 247 IPR044136 GO:0000166
Bva06g00692 589 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 257 587 IPR006195 -
Bva06g00692 589 MobiDBLite consensus disorder prediction 1 64 - -
Bva06g00692 589 Pfam tRNA synthetases class II (D, K and N) 235 585 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Bva06g00692 589 Pfam OB-fold nucleic acid binding domain 116 193 IPR004365 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00692 Bva-Chr6 6679781 6685890 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00692 K04567 - gmx:100785660 1024.62