Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00672 ATGTGGTTCAGCAGAAGTTCGTTTTGTTCTCTCTCCTCTTCggccatttcttcttcttctgactACAAAACCTCCTCTTCTGTCCAGACATTACTCAAAGGCGGCTTCACACCCACGCTTAAATCAATTAACCGAttccttctcttcctcttccggGTCCAGAAGTTCGACTTAATCATTCGCTTCTTCTCCCAGTTAAACTCTAACAAAATCGATGGCAATCATCGAACTCACTCAGTCTTTACATGGGCACTCCTCAAATCtcagaaatttgaagaagcaGAGTTGTTCATGAAGACCCACATCATTAAATCTTCCGAATTTCCCATAAATCGTATGTGGAACACTCTAATTCAGGGATTTTGCAACACACGAGAAGACCCAGAAAAGGCACTTTCCATATTAAGGGATTGTTTGAGGAACCGCGATGTATTGCCttcttctttcactttttgttCAATGATTCATAAGTTAAGCTCCCAGGGTAACATGGGCAAGGCAATTGAAGTGCTGGAGTTGATGGCAGATGAGCAAGTCAAGTACCCGTTTGATAATTTCGTTTGTAGTTCAGTGATTTCGGGGTTTTGTAGGGTTGGAAAACCGGAACTTGCGCTGGCTTTTTTCGAGAATGCTACAAATTCTGGAGCTCTGCAGCCTAATGTCGTGACTTATACAGCGCTTGTAGGTTCTCTTTGTAAGTTGGGAAGAGTCAATGAAGTATGTGACTTGGTTTGTGAGATGGAAAAGGAAGGGTTGGCTTTGGACGTTGTTTTCTATAGCAGCTGGGTTTGTGGATATATTGAAGAGAAGGTTCTATTGGAGGTGCTAAGAAAGATGAGAGAAATGGTGGAAAAGGGTATAGAGCACGATACCATCAGCTATACCATACTCATAGATGGCTTTTCTAAGTTAGGAGATGTGGAAAAGGCAGTTGGCTTCTTATCCAAGATGTTTAAAGAAGGGCAGAAACCCAATACGGTTACATACACAGCAATTATATCAGCGTATtgtaaaaagggaaaattggAGGAAGCTTTGGCTATTTTCAATAGCATTAAAGACACGGGAATTGAACTCGatgaatttatatttgcaACTTTAATTGATGGATTTAGCCAGAGAGGAGTTTTCAATAATGTGTTTCATCTGTTTGATGAAATGGAGCAAAGGGGGATCAGTCCTAGTATTGTTACTTTCAACACTGTAATAAATGGATTGTGCAAGTTTGGGATGACCTCTGAAGCAGATGATTTCTCAAAACTTGTTGCTGCAGATATTATTACATACAGTACCTTGTTGCATGGGTATACAAAGGAAGAGAACATCCCAGGggttttgcaaataaaaaggCGTCTAGAAGAAGCTGGAATCTCTATGGATGTTGTAATATGTAATGTGCTCATCAAAGCGCTGTTTATGGTAGGGGCACATGAAGATGTTTATGCTCTCTACAAAGCAATGCCAACGATGGATCTGATTGCTGACTCTGTTACTTATTGTACAATGATCGATGGATATTGCAAGGTAGGTAGAATTGATGAGGCACTTGAGATATTTGATGATTTCAGAAAGACATCTATTTCTTCGTGTGCATGCTACAATAGTATTGTTAATGGGCTCTGCAAGAAGGGTATGGTGGAAATGGCCACTGAGGCGTTTATTGAACTAAATGATAAAGGTCTGGAGTTAGATATAGGTATATCCAAGATGTTATTGAAGGCaatttgcaaagaaaaaagtggaAAAGAGGTTCTAGATTTAGTTTACAGAATGGAAGCATTGGGGCCCGACAAGTGTAATACAGTGtgtaatgattttattttgttattttgtaaaagaGCATTAGTTGAAGAGGCAAATCAATTGTTCGTGACGATGAGGAAGAAAGGACTAAATGTCACAAGCAAGTCTTATTATTTACTGTTAAGAAGGCATATTAATGATGGAAAATGGAAGCAAAGTCTACCCATCTTAAATATCTTTCTGAAAGAATATGGCCTAGTTGAACCAAGGGTGCAAAAGATACTTGTGCAGTACCTTTGTCTGAGGGATGTTGATACTGCCCTTCAATTTCTGGGAAAAACATTGGATAACTCTTTAACATTCACTTTTCCCGTCTCTATTCTCAAGGTTCTTCTAAAGGCGGGTAGAGTTTTGGATGCGTATAAGCTTGTCAAGGAGGCTCAACATACTTTACCAGTCATGAACGTTGTTGATTACTCAATTGTGATTACTGGCTTATGCAAGGGAGGTTATGTCAATAAAGCATTGGACCTTTGTACTTATGTTGAAAAGAAGGGGATCACCTTGAACATAGTCTCTTATAATTCAATTATGAAAGGTTTGTTGCATGAGGGATGTCTTTTTGAAGCATGGCGACTATTTGATTCGTTAGAGAAAGTCAATTTGATTCCTTCGGAAGTCACTTACgctacattaatttatgctttatCTAGAGACGGATTTCTGCTAGATGCAAAGCATGTTTTTGGGAAAATGGTCCTCAAGGGCTTTCAACCAAATATACAAGTTTATAATTCATTACTTGATGGTTTTTCTAAGTTTGGTCAATTAGAGGAGGCCTTCAAGCTTTTGAATGATATggagacaaaatttattgagCCTGACAGTTTTTCTGTCAGCGCTGTAATAAATTGCTATTGCCAGAAGGGTGAAATGGAAGGAGCTCTTGCATTCTTTTCTGAGTTCAAGAGGAAAGGTATATCACCTGATTTTTTGGGTTTCCTACATTTAATTAGAGGTTTATGTGCCAAAGGAAGGATGGAAGAAACCAGGAATGTGTTGAGGGAAATGCTCCAGTGCAAGCCTGTCATAGAGTTGATTAACATAGTCAATGCTGAGGTTGAGACAGAGTCAATAGGagattttcttgtctttttatGTGAACAAGGAAGCATTCAAGAAGCTGTTACAGTTCTTAATGAAATTGCACGTACGCTTTTTCCTGATCGGAGGTTGTCCACTTCTAATCAAGGATCCCACATACTTCAGAATATTAATGAATGGAAGGATTTTGCTTCAGATTCTTCAATGCCTCTATCTTCATCTAACAAAACTGAAACGGATTTGGAATCTTGTGATTCAAGGGACAGTAGGAATGGTTTGATAAATCATGGTAGTTATGTGCGAAGATCTCAATCAAACAATTTTGACTTCTACTATTCTGGAATTGCTGCACTCTGTTCCAGAGGAGAATTGCAGAAAGCTAGtcaattaacaaaagaaatgcttTCTGACCTGACAGAATCTATGAACTG 3278 0.3633 MWFSRSSFCSLSSSAISSSSDYKTSSSVQTLLKGGFTPTLKSINRFLLFLFRVQKFDLIIRFFSQLNSNKIDGNHRTHSVFTWALLKSQKFEEAELFMKTHIIKSSEFPINRMWNTLIQGFCNTREDPEKALSILRDCLRNRDVLPSSFTFCSMIHKLSSQGNMGKAIEVLELMADEQVKYPFDNFVCSSVISGFCRVGKPELALAFFENATNSGALQPNVVTYTALVGSLCKLGRVNEVCDLVCEMEKEGLALDVVFYSSWVCGYIEEKVLLEVLRKMREMVEKGIEHDTISYTILIDGFSKLGDVEKAVGFLSKMFKEGQKPNTVTYTAIISAYCKKGKLEEALAIFNSIKDTGIELDEFIFATLIDGFSQRGVFNNVFHLFDEMEQRGISPSIVTFNTVINGLCKFGMTSEADDFSKLVAADIITYSTLLHGYTKEENIPGVLQIKRRLEEAGISMDVVICNVLIKALFMVGAHEDVYALYKAMPTMDLIADSVTYCTMIDGYCKVGRIDEALEIFDDFRKTSISSCACYNSIVNGLCKKGMVEMATEAFIELNDKGLELDIGISKMLLKAICKEKSGKEVLDLVYRMEALGPDKCNTVCNDFILLFCKRALVEEANQLFVTMRKKGLNVTSKSYYLLLRRHINDGKWKQSLPILNIFLKEYGLVEPRVQKILVQYLCLRDVDTALQFLGKTLDNSLTFTFPVSILKVLLKAGRVLDAYKLVKEAQHTLPVMNVVDYSIVITGLCKGGYVNKALDLCTYVEKKGITLNIVSYNSIMKGLLHEGCLFEAWRLFDSLEKVNLIPSEVTYATLIYALSRDGFLLDAKHVFGKMVLKGFQPNIQVYNSLLDGFSKFGQLEEAFKLLNDMETKFIEPDSFSVSAVINCYCQKGEMEGALAFFSEFKRKGISPDFLGFLHLIRGLCAKGRMEETRNVLREMLQCKPVIELINIVNAEVETESIGDFLVFLCEQGSIQEAVTVLNEIARTLFPDRRLSTSNQGSHILQNINEWKDFASDSSMPLSSSNKTETDLESCDSRDSRNGLINHGSYVRRSQSNNFDFYYSGIAALCSRGELQKASQLTKEMLSDLTESMN 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00672 1092 Pfam PPR repeat 740 768 IPR002885 -
Bva06g00672 1092 Pfam PPR repeat 187 209 IPR002885 -
Bva06g00672 1092 Pfam PPR repeat 532 561 IPR002885 -
Bva06g00672 1092 Pfam PPR repeat 604 631 IPR002885 -
Bva06g00672 1092 Pfam PPR repeat 149 177 IPR002885 -
Bva06g00672 1092 Pfam PPR repeat 918 941 IPR002885 -
Bva06g00672 1092 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
Bva06g00672 1092 PANTHER ATPASE EXPRESSION PROTEIN 3 764 1089 - -
Bva06g00672 1092 PANTHER ATPASE EXPRESSION PROTEIN 3 707 768 - -
Bva06g00672 1092 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 736 770 IPR002885 -
Bva06g00672 1092 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 771 805 IPR002885 -
Bva06g00672 1092 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 254 IPR002885 -
Bva06g00672 1092 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 876 910 IPR002885 -
Bva06g00672 1092 Gene3D Tetratricopeptide repeat domain 177 250 IPR011990 GO:0005515
Bva06g00672 1092 Pfam Pentatricopeptide repeat domain 424 470 IPR002885 -
Bva06g00672 1092 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 459 IPR002885 -
Bva06g00672 1092 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 495 529 IPR002885 -
Bva06g00672 1092 Gene3D Tetratricopeptide repeat domain 822 963 IPR011990 GO:0005515
Bva06g00672 1092 Gene3D Tetratricopeptide repeat domain 376 493 IPR011990 GO:0005515
Bva06g00672 1092 PANTHER FERTILITY RESTORER-LIKE 63 577 - -
Bva06g00672 1092 Pfam PPR repeat 321 351 IPR002885 -
Bva06g00672 1092 Pfam PPR repeat 217 248 IPR002885 -
Bva06g00672 1092 Pfam PPR repeat 285 317 IPR002885 -
Bva06g00672 1092 Pfam PPR repeat 494 520 IPR002885 -
Bva06g00672 1092 PANTHER ATPASE EXPRESSION PROTEIN 3 63 577 - -
Bva06g00672 1092 PANTHER FERTILITY RESTORER-LIKE 764 1089 - -
Bva06g00672 1092 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 324 IPR002885 -
Bva06g00672 1092 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 841 875 IPR002885 -
Bva06g00672 1092 Gene3D Tetratricopeptide repeat domain 495 603 IPR011990 GO:0005515
Bva06g00672 1092 Gene3D Tetratricopeptide repeat domain 269 375 IPR011990 GO:0005515
Bva06g00672 1092 Gene3D Tetratricopeptide repeat domain 683 821 IPR011990 GO:0005515
Bva06g00672 1092 Pfam PPR repeat family 840 889 IPR002885 -
Bva06g00672 1092 Pfam PPR repeat family 360 408 IPR002885 -
Bva06g00672 1092 Pfam PPR repeat family 771 818 IPR002885 -
Bva06g00672 1092 PANTHER FERTILITY RESTORER-LIKE 707 768 - -
Bva06g00672 1092 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Bva06g00672 1092 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 806 840 IPR002885 -
Bva06g00672 1092 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
Bva06g00672 1092 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
Bva06g00672 1092 TIGRFAM PPR: pentatricopeptide repeat domain 497 527 IPR002885 -
Bva06g00672 1092 TIGRFAM PPR: pentatricopeptide repeat domain 844 877 IPR002885 -
Bva06g00672 1092 TIGRFAM PPR: pentatricopeptide repeat domain 773 806 IPR002885 -
Bva06g00672 1092 TIGRFAM PPR: pentatricopeptide repeat domain 149 176 IPR002885 -
Bva06g00672 1092 TIGRFAM PPR: pentatricopeptide repeat domain 532 564 IPR002885 -
Bva06g00672 1092 TIGRFAM PPR: pentatricopeptide repeat domain 880 911 IPR002885 -
Bva06g00672 1092 TIGRFAM PPR: pentatricopeptide repeat domain 327 361 IPR002885 -
Bva06g00672 1092 TIGRFAM PPR: pentatricopeptide repeat domain 397 418 IPR002885 -
Bva06g00672 1092 TIGRFAM PPR: pentatricopeptide repeat domain 222 255 IPR002885 -
Bva06g00672 1092 TIGRFAM PPR: pentatricopeptide repeat domain 808 842 IPR002885 -
Bva06g00672 1092 TIGRFAM PPR: pentatricopeptide repeat domain 292 326 IPR002885 -
Bva06g00672 1092 TIGRFAM PPR: pentatricopeptide repeat domain 740 771 IPR002885 -
Bva06g00672 1092 TIGRFAM PPR: pentatricopeptide repeat domain 363 395 IPR002885 -
Bva06g00672 1092 Gene3D Tetratricopeptide repeat domain 7 176 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00672 Bva-Chr6 6519876 6524360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00672 736 982 Glycosyltransferase AT1G05670 31.618 2.10e-34 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00672 - K17964 gmx:100783405 1447.18