Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00604 ATGGAGACTCCGCAGCAGCAAGGAGtggtgaagaagaaggaaaccAGAGGTCGAAAGCCCAAGCCCAAGGacgaaaagaaagaggaacaACTGCAACAGCAAATTGGGAAGATGATGAAGGAAGGGAAAAAATCTCAGCAATATCACTCTGTTGACGAGAAGTACACCCAATGGAAGTCTCTCGTCCCCGTTCTCTATGACTGGCTCGCCAATCACAACCTCGTCTGGCCTTCTCTCTCTTGCCGGTGGGGTCCTCAGCTTGAGCAAGCTACTTACAAGAATCGCCAGCGTCTCTACCTCTCTGAGCAGACTGATGGTAGTGTTCCAAACACTCTGGTCATTGCGAACTGCGAAGTTGTTAAGCCTAGGGTTGCAGCTGCAGAGCACATCTCGCAGTTTAATGAAGAGGCACGCTCACCATTTGTGAAGAAGTACAAGACAATCATACATCCTGGAGAGGTTAACAGAATTAGGGAATTACCACAGAATTCTAAGATAGTGGCTACTCACACTGATAGTCCTGACGTTCTCATTTGGGATGTTGAAAGTCAACCTAACCGTCATGCTGTACTTGGAGCTGCAAATTCACGTCCTGATCTGATATTGACTGGACACCAAGATAATGCGGAATTTGCTCTTGCTATGTGCCCAACCGAGCCCTATGTGCTTTCTGGAGGAAAGGACAAATCCGTGGTCTTGTGGAGTATTCAGGACCATATAACATCTGGTGCTGCAGACTCCAAATCTGGTGGGTCAATTATCAAGCAGAACCCCAGAGAGGGCAATGATAAGGCCACTGATAGTCCATCTGTTGGACCACGAGGTATCTACTATGGGCATGAGGATACCGTTGAAGATGTGACTTTCTGCCCTTCCAGTGCACAGGAGTTCTGTAGCGTTGGTGATGATTCTTGTCTTATACTATGGGATGCACGTACTGGCTCTAGTCCCGTGGTCAAGGTTGAAAAAGCTCATAATGCTGATCTTCACTGTGTTGACTGGAACCCTCATGATGTTAATCTTATTCTAACTGGGTCTGCAGATAATTCTATTCGCATGTTTGATCGCCGTAATTTGACCTCTAATGGAGTTGGATCACCTGTCCATAAATTTGAGGGTCACAGTGCTGCAGTTCTCTGTGTTCAGTGGTCTCCAGATAAATCATCTGTATTTGGAAGTTCTGCAGAAGATGGCCTCTTAAACATTTGGGACTATGAGAAGGTTGGTAAAAGAATAGAGCAATCTGGAAGGACACCGAGCTCTCCTCCAGGGTTGTTTTTCCAACATGCAGGACATAGAGACAAAGTTGTTGACTTCCATTGGAATGCCTCTGATCCATGGACTATTGTTAGTGTGTCCGATGATTGCGATAGCACTGGTGGAGGGGGAACATTGCAGATATGGCGCATGAGTGATTTGATATATAGACCAGAAGAGGAGGTTCTGGCAGAGCTTGAGAAATTCAAGGCCCACGTGGTTGCATGTACTTCAAAGCCCGAAAAATG 1505 0.4532 METPQQQGVVKKKETRGRKPKPKDEKKEEQLQQQIGKMMKEGKKSQQYHSVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVESQPNRHAVLGAANSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSGAADSKSGGSIIKQNPREGNDKATDSPSVGPRGIYYGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARTGSSPVVKVEKAHNADLHCVDWNPHDVNLILTGSADNSIRMFDRRNLTSNGVGSPVHKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKRIEQSGRTPSSPPGLFFQHAGHRDKVVDFHWNASDPWTIVSVSDDCDSTGGGGTLQIWRMSDLIYRPEEEVLAELEKFKAHVVACTSKPEK 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00604 501 MobiDBLite consensus disorder prediction 243 275 - -
Bva06g00604 501 SMART WD40_4 315 355 IPR001680 GO:0005515
Bva06g00604 501 SMART WD40_4 364 404 IPR001680 GO:0005515
Bva06g00604 501 SMART WD40_4 270 310 IPR001680 GO:0005515
Bva06g00604 501 SMART WD40_4 195 235 IPR001680 GO:0005515
Bva06g00604 501 SMART WD40_4 141 180 IPR001680 GO:0005515
Bva06g00604 501 SMART WD40_4 422 469 IPR001680 GO:0005515
Bva06g00604 501 SUPERFAMILY WD40 repeat-like 146 472 IPR036322 GO:0005515
Bva06g00604 501 ProSiteProfiles Trp-Asp (WD) repeats profile. 371 406 IPR001680 GO:0005515
Bva06g00604 501 MobiDBLite consensus disorder prediction 7 33 - -
Bva06g00604 501 MobiDBLite consensus disorder prediction 1 33 - -
Bva06g00604 501 ProSiteProfiles Trp-Asp (WD) repeats profile. 277 319 IPR001680 GO:0005515
Bva06g00604 501 PANTHER WD40 REPEAT FAMILY 22 499 - -
Bva06g00604 501 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI4 22 499 - -
Bva06g00604 501 Pfam WD domain, G-beta repeat 323 355 IPR001680 GO:0005515
Bva06g00604 501 Pfam WD domain, G-beta repeat 200 235 IPR001680 GO:0005515
Bva06g00604 501 Pfam WD domain, G-beta repeat 365 404 IPR001680 GO:0005515
Bva06g00604 501 Pfam WD domain, G-beta repeat 275 310 IPR001680 GO:0005515
Bva06g00604 501 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 371 406 - -
Bva06g00604 501 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 53 119 IPR022052 -
Bva06g00604 501 Gene3D - 27 487 IPR015943 GO:0005515
Bva06g00604 501 ProSiteProfiles Trp-Asp (WD) repeats profile. 322 355 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00604 Bva-Chr6 6164875 6170767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00604 277 439 Miscellaneous Gene Families AT5G08390 25.882 2.69e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00604 K10752 - gmx:100779302 907.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g00604 06 6164875 6170767 Bva06g00604 06 6164875 6170767 ECH