Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00576 ATGGACTGCGTTGGAGCCCGGAATTTCGCGGCAATGACGGTGTGTTTTATCCCGTCTTCGAGGTGCCGAAGGAAGAGTATGATGAGAAAGCAAACGTCTTTTTGTGGATATAGTTGGTGTTATTCACATTGCTTACGGGTGAAAGCTAGTGCAACTGCAGGGAGTGAAAGTTGCGTGGCTGTTAAAGAGAATTTCGCCGATGAGGAAGATTATATCAAGGCTGGTGGCTCTGAACTTCTTTTCGTCCAAATGCAGCAGAATAAATCCATGGATATGCAATCTAAGCTTGCAGATAAGTTACCACCAATATCTATAGGAGATGATTTATTGGATCTAGTTGTGATTGGTTGTGGTCCAGCTGGTCTTGCTCTTGCTGCAGAATCTGCCAAGTTAGGACTAAAAGTTGGACTTATTGGTCCGGATCTcccttttacaaataattatggCGTGTGGGAGGATGAATTTAAAGGTATTGGACTTGAAGGTTGTATTGAGCATGTCTGGCAGGATACTATAGTATATCTTGATGATAAGGATCCAATTTTAGTTGGCCGTGCTTACGGACGCGTCAGTCGACATCTGCTTCATGAGGAATTGTTAAGAAGGTGTGTCGAGTCAGGTGTATCATATCTTAGCTCAAGAGTAGAAAGGATTGTTGAAACTGGCAATGGTCAGAGTCATGTTTCTTGTGAAGATGGTATTGTAGTGCCCTGCAGGCTTGTTACTGTTGCATCAGGAGCGGCTTCGGGAAAACTATTGCAGTATGAGGTTGGGGGTCCAAAGGTGTCTGTTCAAACAGCTTACGGTGTGGAGGTTGAGGTGGAAAACAATCCCTATGATCCAAACCTCATGGTTTTCATGGATTACAGAGATTTCATGAAGCAAAATGGTCCATGTCTAGAAGCCAATTATCCAACATTTCTTTATGTGATGCCCATGTCTCCAACAAGAGTGTTCTTTGAGGAAACTTGTTTGGCCTCAAAAGATGCTATGccttttgatttattgaaGAAGAAGCTCTTTTCAAGACTCAATACCATGGGGatcaaaatcacaaaaacttATGAAGAGGAATGGTCTTATATTCCAGTTGGTGGATCCTTACCAAATACAGAGCAAAAGAATCTCGCATTTGGTGCTGCTGCCAGCATGGTGCATCCAGCCACAGGATATTCAGTTGTGAGATCTTTGTCAGAAGCTTCAAAATATGCTTCAGTAATTGCTTCTATATTGAAAGAGAGTCATCCAAGGGACAATCTTACTCACGAAAGAACTAAAGAAAATCTATCTATGCAAGCCTGGAACACACTTTGGccacaagaaagaaaacgaCAAAGGgcattctttctctttggatTAGCATTAATTCTGCAGCTAGACATTGAGGAAATCAGATCGTTCTTTCATACTTTCTTTCGGTTACCTGATTGGATGTGGCAAGGATTTCTTGGTTCTACTCTGTCCTCTACAGACCTTGTACTGTTTGCATTCTACATGTTCATCATAGCACCAAATAACTTGAGGATGTGTCTAGTCAGACATCTATTTTCAGATCCTACTGGAGCAACTATGATCAAGACCTACTTAACAATATA 1595 0.3975 MDCVGARNFAAMTVCFIPSSRCRRKSMMRKQTSFCGYSWCYSHCLRVKASATAGSESCVAVKENFADEEDYIKAGGSELLFVQMQQNKSMDMQSKLADKLPPISIGDDLLDLVVIGCGPAGLALAAESAKLGLKVGLIGPDLPFTNNYGVWEDEFKGIGLEGCIEHVWQDTIVYLDDKDPILVGRAYGRVSRHLLHEELLRRCVESGVSYLSSRVERIVETGNGQSHVSCEDGIVVPCRLVTVASGAASGKLLQYEVGGPKVSVQTAYGVEVEVENNPYDPNLMVFMDYRDFMKQNGPCLEANYPTFLYVMPMSPTRVFFEETCLASKDAMPFDLLKKKLFSRLNTMGIKITKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEASKYASVIASILKESHPRDNLTHERTKENLSMQAWNTLWPQERKRQRAFFLFGLALILQLDIEEIRSFFHTFFRLPDWMWQGFLGSTLSSTDLVLFAFYMFIIAPNNLRMCLVRHLFSDPTGATMIKTYLTI 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00576 531 TIGRFAM carotene-cycl: lycopene cyclase family protein 111 510 IPR010108 GO:0016117|GO:0016705
Bva06g00576 531 PANTHER BNAC09G53690D PROTEIN 1 477 - -
Bva06g00576 531 Pfam Lycopene cyclase protein 111 508 - -
Bva06g00576 531 PANTHER - 1 477 - -
Bva06g00576 531 SUPERFAMILY FAD/NAD(P)-binding domain 110 504 IPR036188 -
Bva06g00576 531 Gene3D - 109 487 IPR036188 -
Bva06g00576 531 PRINTS Pyridine nucleotide disulphide reductase class-I signature 241 250 - -
Bva06g00576 531 PRINTS Pyridine nucleotide disulphide reductase class-I signature 111 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00576 Bva-Chr6 6015118 6020263 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00576 K06444 - gmx:100790686 882.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g00576 06 6015118 6020263 Bva06g00576 06 6015118 6020263 ECH