Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00540 ATGGCTTGCGTGTACATACCGGTGCAGAATTCTGAAGAGGAGGTCAGGGTTGCTCTGGATCAGCTCCCCAGGGATGCCTCTGACATCCTCGACATTCTTAAAGCCGAACAAGCCCCTCTCGATCTCTGGCTCATGATCGCGAGGGAGTACTTCAAGCAGGGAAAACTTGAACAATTTCGCCAGATTTTGGAGGAAGGATCAAGTCCTGAAATTGATGACTATTATGCCGATGTTAGATATGAGAGGATTGCTATCTTAAACGCTCTGGGGGCCTACTATAGCTACCTTGGAAAAATAGAgacaaaacaaagagaaaaagaggagCACTTCATTTTGGCAACACAATATTACAATAAAGCATCAAGAATTGACATGCATGAGCCTTCCACTTGGGTTGGAAAAGGTCAGCTCTTACTAGCAAAGGGTGAAGTAGAACAGGCATCTGCTGCATTCAAGATTGTGTTAGATGGAGATCGTGATAATGTTCCTGCTCTTCTGGGTCAGGCATGTGTCGAGTTCAATCGTGGGCGCTTTTCTGATTCGCTTGAATTGTATAAGAGGGCATTGCAAGTTTATCCGGGTTGCCCTGCAGCTGTGAGACTTGGCATAGGTCTATGTCGCTACAAATTAGGCCAGTTTGAGAAGGCTCGACAGGCATTTGAGCGTGTTTTGCAgTTAGATCCAGAAAATGTTGAGGCTCTTGTTTCACTTGCAATAATGGATTTACGCACTAATGAAGCTGCTGGAATCAGAAAGGGAATGTTAGAAATGCAGAGGGCATTTGAGATATACCCTTACTGTGCAATGGCACTGAATTATCTGGCgaatcattttttcttcactgGGCAACATTTTTTAGTTGAGCAACTGACTGAAACTGCACTTGCTGTTACGAATCATGGTCCAACAAAAGCGCATTCTTATTACAATTTAGCACGATCTTACCATAGCAAGGGGGACTATGATAAGGCTGGGGTTTATTACATGGCATCTGTCAAGGAAGTCAATAAGCCCCATGAATTTGTGTTTCCTTATTTTGGTTTGGGTCAAGTGCAATTGAAGTTGGGAGATCTCAAAAGTGCACTCTCAAACTTTGAGAAGGTTTTGGAGGTGTACCCGGATAATTGTGAGACATTGAAAGTACTTGGGCACATATATGTTCAGCTTGGTCAGATTGACAAGGGCATGGAATTTATGAGGAAAGCTACAAAAATTGATCCACGTGATGCCCAGGCATTTCTTGAACTAGGAgaattgttaattttgtctGACACAGGAGCTGCTCTGGATGCTTTCAAAACCGCACGTATTCTTTTTAAGAAGGGAGGTCAAGAAGCACCAATTGAGTTACTCAATAATATTGGTGTCCTTCAATTTGAAAGAGGGGAATTTGAGCTTGCTCAACAAACTTTCAATGAAGCTCTAGGTGATGGAATATGGGTTACATTCATTGGCGATGAAAAGAAGTCATCTGCATCTACTATTCAATTCAAGGACATGAAGTTGTTTCATGATCTTGAAAGTAATGGTCACCATGTGGAAGTACCTTGGGACAAAGTGACAGTACTCTTTAACCTGGCTCGGTTACTGGAGCAGTTAAACAAATCTGGAACTGCAAGTATTTTGTATCGTCTGATTTTGTTTAAGTACCCTGATTATATTGATGCTTATCTACGGCTAGCTGCTATTGCAAAAGCTCAGAACAACGTGCTCTTAAGCATTGAACTGGTTAATGATGCCCTGAAGGTAAATGACAAGTGTTCAAATGCATTATCTATGCTTGGTGAATTGGAGTTGAAGAATGATGATTGGGTCAAGGCAAAGGAAACCCTGCGGGCAGCTAGTGATGCAACTGATGGGAAGGATTCTTATGCTATTCTTTCTCTGGGAAACTGGAACTATTTTGCAGCAATTCgcaatgaaaaaagaaatccaaagCTGGAAGCTACTCATTTGGAAAAGTCCAAGGAGCTTTATACTAAAGTCCTCTTACAGCATCCTGCTAATCTATATGCTGCCAATGGCGCTGGAGTAGTATTTGCAGAGAAAGGCCATTTTGATGTTTCAAAGGATATTTTCACACAGgTTCAAGAAGCTGCAAGTGGCAGTGTTTTTGTCCAGATGCCTGATGTATGGATAAATTTGGCACACGTTTATTTTGCTCAGGGAAATTTTGCTTTGGCTGTAAAGATGTATCAGAACTGCTTGCGGAAGTTTTATTATAACACAGACTCTCAAATACTTCTGTATTTAGCACGCACCCATTATGAGGCTGAACAGTGGCAAGACTGTATAAAAACACTACTAAGAGCTATCCATTTGGCACCCTCGAATTATACCCTAAGGTTTGATGCAGGTGTTGCAATGCAAAAGTTCTCAGCATCAACATTACAAAAGGCAAAAAGAACTGCAgatgagGTGCGATCAACAGTTGCAGAACTACAAAATGCTGTTCGCATATTTAGTCAGCTATCTGCTGCTTCCAACCTACATATTCATGGGTTTgatgagaagaaaattgaCACCCATGTTGGTTACTGCAACCACTTACTTTCAGCTGCGAAGGTTCATCTTGAAGCAGCTGAGCGTGAGGAACAGCAGATACGACAGAGACAAGAACTTGCTCGTCAGGTTGCTATAGCTGAGGAAGCCCGGCGTAAGGCTGAAGAACAAAGGAAATATCAGTTGGAAAGGAGAAAGCAAGAGGATGAGCTGAAACGAGTGCAGCAACAGGAGGAGCATTTTAGGCGTGTAAAGGAGCAATGGAAGAGCACTCAGGGTTCAAAACGGAGAGAAAGGTCAGATGATGAGGAGGGCGGGACTAATgagaagaggagaagaaagggtggaaagaagagaaagaaggataAGCACTCAAAATCACGCTATGACACAGAGGAGACTGAAGCTGATATGATGGGTGAACAGGAAGTGGAGGATGAAGATGTTGACTATGGAGAGCCCAAAACTCAGATGAATGATGATGATGCTGAAGAGAATGCTCAGGGTCTTCTTGCAGCAGCTGGGCTGGAAGATTCTGATGCAGATGATGAGCCgGCGGCACCTTCTGCTGCAAGTCGACGGAGACGAGCATTGTCCGAATCTGATGATGATGAGCCATTAGAGAGGCAGTCGAGTCCTATCAGAGAAAATTCTGCTGATCTACACGAGAGTGATGGAGAAATCCGAGATAGGGATAAAACATATAGAGACGATGCCAGTGATGAAGAGAAACAAGATTA 3242 0.4115 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLMIAREYFKQGKLEQFRQILEEGSSPEIDDYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDRDNVPALLGQACVEFNRGRFSDSLELYKRALQVYPGCPAAVRLGIGLCRYKLGQFEKARQAFERVLQLDPENVEALVSLAIMDLRTNEAAGIRKGMLEMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKAHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYFGLGQVQLKLGDLKSALSNFEKVLEVYPDNCETLKVLGHIYVQLGQIDKGMEFMRKATKIDPRDAQAFLELGELLILSDTGAALDAFKTARILFKKGGQEAPIELLNNIGVLQFERGEFELAQQTFNEALGDGIWVTFIGDEKKSSASTIQFKDMKLFHDLESNGHHVEVPWDKVTVLFNLARLLEQLNKSGTASILYRLILFKYPDYIDAYLRLAAIAKAQNNVLLSIELVNDALKVNDKCSNALSMLGELELKNDDWVKAKETLRAASDATDGKDSYAILSLGNWNYFAAIRNEKRNPKLEATHLEKSKELYTKVLLQHPANLYAANGAGVVFAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAVKMYQNCLRKFYYNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKAKRTADEVRSTVAELQNAVRIFSQLSAASNLHIHGFDEKKIDTHVGYCNHLLSAAKVHLEAAEREEQQIRQRQELARQVAIAEEARRKAEEQRKYQLERRKQEDELKRVQQQEEHFRRVKEQWKSTQGSKRRERSDDEEGGTNEKRRRKGGKKRKKDKHSKSRYDTEETEADMMGEQEVEDEDVDYGEPKTQMNDDDAEENAQGLLAAAGLEDSDADDEPAAPSAASRRRRALSESDDDEPLERQSSPIRENSADLHESDGEIRDRDKTYRDDASDEEKQD 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00540 1080 MobiDBLite consensus disorder prediction 895 1080 - -
Bva06g00540 1080 ProSiteProfiles TPR repeat profile. 342 375 IPR019734 GO:0005515
Bva06g00540 1080 Pfam Tetratricopeptide repeat 134 194 - -
Bva06g00540 1080 Pfam Tetratricopeptide repeat 714 777 - -
Bva06g00540 1080 SUPERFAMILY TPR-like 449 699 IPR011990 GO:0005515
Bva06g00540 1080 SUPERFAMILY HCP-like 203 429 - -
Bva06g00540 1080 SUPERFAMILY TPR-like 650 826 IPR011990 GO:0005515
Bva06g00540 1080 PANTHER RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 1 1054 IPR031101 GO:0006355|GO:0016570
Bva06g00540 1080 Gene3D Tetratricopeptide repeat domain 7 334 IPR011990 GO:0005515
Bva06g00540 1080 ProSiteProfiles TPR repeat region circular profile. 197 230 - -
Bva06g00540 1080 ProSiteProfiles TPR repeat region circular profile. 342 375 - -
Bva06g00540 1080 Pfam Tetratricopeptide repeat 353 412 - -
Bva06g00540 1080 ProSiteProfiles TPR repeat profile. 197 230 IPR019734 GO:0005515
Bva06g00540 1080 Pfam Tetratricopeptide repeat 305 333 IPR019734 GO:0005515
Bva06g00540 1080 Coils Coil 797 817 - -
Bva06g00540 1080 MobiDBLite consensus disorder prediction 895 945 - -
Bva06g00540 1080 ProSiteProfiles TPR repeat profile. 709 742 IPR019734 GO:0005515
Bva06g00540 1080 MobiDBLite consensus disorder prediction 970 984 - -
Bva06g00540 1080 Coils Coil 851 918 - -
Bva06g00540 1080 Gene3D Tetratricopeptide repeat domain 628 831 IPR011990 GO:0005515
Bva06g00540 1080 ProSiteProfiles TPR repeat profile. 376 409 IPR019734 GO:0005515
Bva06g00540 1080 Pfam Tetratricopeptide repeat 200 230 IPR001440 GO:0005515
Bva06g00540 1080 MobiDBLite consensus disorder prediction 1021 1080 - -
Bva06g00540 1080 Gene3D Tetratricopeptide repeat domain 344 493 IPR011990 GO:0005515
Bva06g00540 1080 SMART tpr_5 709 742 IPR019734 GO:0005515
Bva06g00540 1080 SMART tpr_5 588 621 IPR019734 GO:0005515
Bva06g00540 1080 SMART tpr_5 448 483 IPR019734 GO:0005515
Bva06g00540 1080 SMART tpr_5 520 553 IPR019734 GO:0005515
Bva06g00540 1080 SMART tpr_5 128 161 IPR019734 GO:0005515
Bva06g00540 1080 SMART tpr_5 342 375 IPR019734 GO:0005515
Bva06g00540 1080 SMART tpr_5 305 338 IPR019734 GO:0005515
Bva06g00540 1080 SMART tpr_5 197 230 IPR019734 GO:0005515
Bva06g00540 1080 SMART tpr_5 745 778 IPR019734 GO:0005515
Bva06g00540 1080 SMART tpr_5 554 587 IPR019734 GO:0005515
Bva06g00540 1080 SMART tpr_5 376 409 IPR019734 GO:0005515
Bva06g00540 1080 SMART tpr_5 162 195 IPR019734 GO:0005515
Bva06g00540 1080 SUPERFAMILY TPR-like 115 245 IPR011990 GO:0005515
Bva06g00540 1080 Gene3D Tetratricopeptide repeat domain 494 627 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00540 Bva-Chr6 5806490 5819176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00540 319 475 Glycosyltransferase AT3G04240 25.773 8.01e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00540 K15176 - gmx:100794371 1876.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g00540 06 5806490 5819176 Bva06g00540 06 5806490 5819176 ECH