Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00395 ATGGCTTCAATCTCTCTCTCATTTTCGTCTTCGATTCTTTCCACACCAGTCTCTCAGGAAAAATGCAAGATACACAGCACCCCAATCCATAGAACCCAAGATTCATTTTCTCGAGTTATTCGCTGCGCAATTGCTGCCACTCCAGCGACAAAAACTTcttctgataaaaaaagacaCTGGAAAGAAGGTGAATATCCTGGCATTTCCGAAACTTCGTTATCTGGGAGCACGAGGAAGACACCCattaagaatttgaagaagaaattggaaCGCAAGGCCAATGCCAAAGCCTGGGTCAGTACTGTCACGGAAACCTTATCCGATCGTATCGAGAAGAAGCAGTGGCTTCAAGCCCTTGAGGTATTTGACATGCTTAGAGAACAACCGTTTTACGAACCTAAAGAAGGGACTTACATGAAGCTCATTGTATTGCTTGGAAAATGTGGCCAACCCCATCGTGCCAAACAGCTTTTTGAGACaatgattaaagaaaattgtgatCCTACTCCTGAGCTTTACACAGCCCTACTTGCAGCATATTGTCGGAAAAATCTCATTGACGAggcatttttaattcttaataagATGAAGAATCTCCCTCTTTGCCAGCCTGACGTTTTTACTTACAGTACCTTAATAAAAGCTTGTGTGGAtgctttgaaatttgatttagttGAGTTATTGTATGAAGAGATGGCTGAAAGATCTATCACGCCAAACACAGTCACTCAAAACATTGTCTTGAGTGGTTATGGAAAGGCAGGGAAGTTTGATCAGATGGAGAAAGTGCTGTCAAGTATGCTAGAGAGCACCACGTGCAAGCCTGATGTCTGGACCATGAACACAATCATCAGTGTCTTTGGTAATAAGGGTCAGATTGATATGATGGAAAGTTGGTATGAAAAATTTCGAAACTTTGGGATAGACCCGGAAACACGCACTTTTAATATCTTGATTGGTGcttatggaaagaaaagaatgtacGACAAAATGTCATCAGTGATGGAGTATATGCGCAAGTTTCAGTTTCCTTGGACAACATCAACTTTTAACAATGTGATCGAAGCATTTGCATCTGCAGGGGATGCTAAAAACATGGAGTACACATTTGATCAGATGCGTGCTGAGCGAATGAAAGTAGACACTAAGACTATCTGCTGCCTTATCAACGGTTATGCCAATGCAGGTCTCTTCCATAAAGTAATTAGCACTGTTCGCTTGGCTGGAAAATTGGAGATACCTGAGAATACCTCGTTTTATAATGCAGTCATAAGTGCATGTGCAAAAGCAGAAGATTTGATGGAGATGGAGAGAGTTTTCATACgtatgaaaaataatcattGCCAACCAGATGAAACAACATATTCTATCATGGTTAATGCTTACCGAAAAGAAGGTATGAATGACAAGATTTATGATTTGgagcaagaaaaacaaaggatGATCTCTGATGATCAAAAGAGTGGCTA 1469 0.3737 MASISLSFSSSILSTPVSQEKCKIHSTPIHRTQDSFSRVIRCAIAATPATKTSSDKKRHWKEGEYPGISETSLSGSTRKTPIKNLKKKLERKANAKAWVSTVTETLSDRIEKKQWLQALEVFDMLREQPFYEPKEGTYMKLIVLLGKCGQPHRAKQLFETMIKENCDPTPELYTALLAAYCRKNLIDEAFLILNKMKNLPLCQPDVFTYSTLIKACVDALKFDLVELLYEEMAERSITPNTVTQNIVLSGYGKAGKFDQMEKVLSSMLESTTCKPDVWTMNTIISVFGNKGQIDMMESWYEKFRNFGIDPETRTFNILIGAYGKKRMYDKMSSVMEYMRKFQFPWTTSTFNNVIEAFASAGDAKNMEYTFDQMRAERMKVDTKTICCLINGYANAGLFHKVISTVRLAGKLEIPENTSFYNAVISACAKAEDLMEMERVFIRMKNNHCQPDETTYSIMVNAYRKEGMNDKIYDLEQEKQRMISDDQKSG 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00395 489 Gene3D Tetratricopeptide repeat domain 365 487 IPR011990 GO:0005515
Bva06g00395 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 239 IPR002885 -
Bva06g00395 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Bva06g00395 489 Pfam PPR repeat 245 270 IPR002885 -
Bva06g00395 489 Pfam PPR repeat 137 166 IPR002885 -
Bva06g00395 489 Pfam PPR repeat 348 376 IPR002885 -
Bva06g00395 489 TIGRFAM PPR: pentatricopeptide repeat domain 172 198 IPR002885 -
Bva06g00395 489 TIGRFAM PPR: pentatricopeptide repeat domain 349 381 IPR002885 -
Bva06g00395 489 TIGRFAM PPR: pentatricopeptide repeat domain 207 241 IPR002885 -
Bva06g00395 489 TIGRFAM PPR: pentatricopeptide repeat domain 137 169 IPR002885 -
Bva06g00395 489 TIGRFAM PPR: pentatricopeptide repeat domain 242 277 IPR002885 -
Bva06g00395 489 TIGRFAM PPR: pentatricopeptide repeat domain 279 310 IPR002885 -
Bva06g00395 489 TIGRFAM PPR: pentatricopeptide repeat domain 420 452 IPR002885 -
Bva06g00395 489 TIGRFAM PPR: pentatricopeptide repeat domain 314 343 IPR002885 -
Bva06g00395 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Bva06g00395 489 Pfam PPR repeat family 173 217 IPR002885 -
Bva06g00395 489 Pfam PPR repeat family 416 462 IPR002885 -
Bva06g00395 489 Pfam PPR repeat family 275 322 IPR002885 -
Bva06g00395 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 450 IPR002885 -
Bva06g00395 489 PANTHER ATPASE EXPRESSION PROTEIN 3 1 484 - -
Bva06g00395 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 134 168 IPR002885 -
Bva06g00395 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Bva06g00395 489 Gene3D Tetratricopeptide repeat domain 71 199 IPR011990 GO:0005515
Bva06g00395 489 Gene3D Tetratricopeptide repeat domain 200 266 IPR011990 GO:0005515
Bva06g00395 489 Gene3D Tetratricopeptide repeat domain 267 364 IPR011990 GO:0005515
Bva06g00395 489 PANTHER OS03G0309800 PROTEIN 1 484 - -
Bva06g00395 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 346 380 IPR002885 -
Bva06g00395 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 240 275 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00395 Bva-Chr6 5060376 5062980 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00395 100 489 Glycosyltransferase AT1G05670 22.362 5.06e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00395 - - aip:107635404 786.949