Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01599 ATGAACACCAGAGGTCGACTTATTGCTGGTTCTCACAACAGAAATGAGTTCGTATTGATCAATGCTGATGAAAATGGACGGATAAAGTCTGTCCAAGAATTAAGTGGACAAAGATGTCAGATATGTGGGGATGAGATAGAGATTACAGTGGACGGGGAGCCCTTTGTTGCCTGCAATGAATGTGCTTTCCCTGTCTGCCGACCTTGCTTTGAGTATGAGAGAAGAGAGGGGAATCAGGCATGCCCACAGTGTAAGACCCGATATAAGCGCATCAAAGGTAGTCCCAGGGTTGAAGGTGATGAGGATGAGGATGATATTGATGACTTGGACAATGAGTTTGATTACATGAACTCTGGTGCTATGGGCCAACAACAAATTCCAGAATCCATGCTTTCTGGACGCCTTAACACTGGCCGTGGTTCTAACACTAATGTTGCTGGAGTACCCACAGAGTTGGAACATGAAGCCTCTCCACTAAATTCTGAAATCCCTCTTTTGACATATGGGGAGGAGGATTCTGAGATATCTGCAGACCGACATGCTTTGATTGTTCCCCCATATATGAATAATGGAAATAGAGTCCATCCCACGCCCTTTGTCGATCCATCAATTCCTTTGCAACCTAGACCAATGGTTCCGAAGAAAGACATTGCAGTATATGGGTATGGAAGTGTGGCATGGAAAGACCGGATGGAGGAATGGAAGAAAAGGCAGAATGACAAACTTCAGGTGGTAAAGCATGAGGGAAATAACAATGGTGGAAACTTTGGAGATGAGTTGGAGGACTCAGATTTGCCTATGATGGATGAAGGCAGGCAGCCACTTTCACGGAAGCTACCTATCCCTTCCAACAAGATAAATCCATACAGAATCATTATAATACTCCGCCTTGTGATCCTTGGGCTCTTCTTCCATTATAGAATTCTTCACCCCGTCAATGATGCGTATGGGTTGTGGTTGACATCAGTTATATGTGAAATATGGTTTGCTGTCTCCTGGATAATGGATCAGTTTCCAAAATGGTGCCCAATAGAGCGAGAAACTTACCTTGATCGACTATCAATGAGGTATGAAAAAGAAGGGACGCTGTCTGAGTTGGCCAGTGTTGACATCTTTGTCAGTACAGTTGATCCCATGAAAGAGCCTCCGCTGATTACAGCAAACACCGTTCTTTCCATCCTTGCAGTGGATTATCCAGTTGATAAAGTTGCATGCTATGTGTCAGATGATGGTGCTGCCATGCTTACTTTTGAAGCACTTTCTGAGACATCTGAATTCGCCAGGCAATGGGTCCCTTTTTGTAAGAAATTTAACATTGAACCCCGGGCTCCAGAATGGTATTTTAATCAGAAGATGGactatttgaaaaataaagtacatCCAGCATTTGTCAGGGAACGGAGAGCTATGAAGAGAGAATATGAAGAATTCAAGGTGAGGATAAATAGTTTGGTGGCAACAGCACAAAAGGTTCCCGAGGATGGATGGACCATGCAGGATGGGACTCCTTGGCCTGGAAATAATGTGAGGGATCATCCTGGCATGATACAGGTCTTCCTTGGTCAGGATGGTGTTCGTGACAATGAAGGAAATGTGTTACCTCGATTGGTTTATGTTTCTCGAGAAAAAAGGCCAGGGTTTGATCACCACAAGAAGGCTGGGGCAATGAATGCTCTTgtACGGGTCTCAGCAGTTATATCAAATGCACCATATCTTCTAAATGTTGATTGTGATCACTACATCAACAATAGCAAGGCGCTTAGAGAAGCTATGTGTTTTATGATGGACCCTCAGTCCGGAAAGAAAGTTTGTTATGTGCAATTTCCTCAAAGATTTGATGGGATTGATCGCCATGATAGATATTCAAATCGCaatgttgtattttttgaTATCAACATGAAAGGATTAGATGGCTTACAAGGACCAATATATGTGGGAACTGGGTGTGTTTTCAGAAGGCAAGCGCTTTATGGAATTGATGCACCTGCCAAGAAGAAGGCTCCCAGTAAATCCTGCAACTGTTGGCCAAAGTGGTGCTGCCTATGTTGTGGctctagaaagaaaaagaatgcaaacaacaaggagaaaaagaagaaggcgAAGCACAGGGAAGCATCAAAGCAGATACATGCACTTGAAAACATTGAGGAGGGAATTGAAGGATCTAACAATGTgaaatcatccaatttgactGAAATGAAATTGGAGAAGAAGTTTGGTCAGTCTCCTGTGTTTATAGCCTCTACCCTTCTGGAAAATGGTGGAATTCCGCAGAATGCAAGTCCTGCATCACTTTTAAAAGAAGCCATCCAAGTAATCAGCTGTGGTTATGAAGACAAAAGTGAATGGGGAAAAGAAGTTGGGTGGATTTATGGTTCTGTGACGGAAGATATCTTGACTGGATTTAAAATGCATTGCCATGGTTGGCGATCTGTTTATTGCATCCCTAAGCGGCCTGCGTTCAAAGGGTCGGCACCTATCAACCTTTCAGATCGTCTAAACCAGGTTCTTAGGTGGGCCCTTGGATCTGTAGAGATTTTCTTGAGCAGACATTGTCCAATCTGGTATGGCTATGGCGGTGGATTGAAGTGGTTGGAGCGCTTTTCCTATATAAACTCAGTTGTTTATCCTTTGACTTCTGTGCCATTGCTTGTTTACTGTACTCTACCGGCCATATGTCTGCTGACTGGAAAATTTATCGTACCCGAGATTAGCAACTATGCTAGTCTTGTCTTCATGGCCCTCTTCATATCTATTGCTGCAACTGGTATCCTTGAGATGCAATGGGGTGGTGTTGGTATAGATGATTGGTGGAGGAATGAACAATTTTGGGTGATTGGAGGTGTTTCTTCACATCTTTTTGCTCTTTTCCAGGGTTTACTGAAGGTTTTGGCTGGTGTTGACACAAATTTCACTGTTACCTCAAAAGCAGCCGATGATGGGGAATTTTCAGAACTCTACATCTTTAAGTGGACATCGCTATTAATCCCTCCAACtactttgttaataataaatattgttggGGTTATAGTTGGGATCTCAGATGCCATCAACAATGGGTATGACTCATGGGGACCACTGTTTGGTAGGTTATTCTTTGCCTTCTGGGTCATCATGCACCTCTACCCATTCCTCAAGGGGTTACTTGGGAAACAAGACCGGCTGCCCACCATTGTATTGGTGTGGTCTATTCTTCTGGCCTCAGTCTTGACTCTAATGTGGGTTCGAATCAACCCGTTTGTGAATAGAGATGGCCCTGTGTTGGAAATTTGTGGATTGAATTGTGACGAGtcatg 3296 0.4211 MNTRGRLIAGSHNRNEFVLINADENGRIKSVQELSGQRCQICGDEIEITVDGEPFVACNECAFPVCRPCFEYERREGNQACPQCKTRYKRIKGSPRVEGDEDEDDIDDLDNEFDYMNSGAMGQQQIPESMLSGRLNTGRGSNTNVAGVPTELEHEASPLNSEIPLLTYGEEDSEISADRHALIVPPYMNNGNRVHPTPFVDPSIPLQPRPMVPKKDIAVYGYGSVAWKDRMEEWKKRQNDKLQVVKHEGNNNGGNFGDELEDSDLPMMDEGRQPLSRKLPIPSNKINPYRIIIILRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWIMDQFPKWCPIERETYLDRLSMRYEKEGTLSELASVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARQWVPFCKKFNIEPRAPEWYFNQKMDYLKNKVHPAFVRERRAMKREYEEFKVRINSLVATAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQDGVRDNEGNVLPRLVYVSREKRPGFDHHKKAGAMNALVRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGLQGPIYVGTGCVFRRQALYGIDAPAKKKAPSKSCNCWPKWCCLCCGSRKKKNANNKEKKKKAKHREASKQIHALENIEEGIEGSNNVKSSNLTEMKLEKKFGQSPVFIASTLLENGGIPQNASPASLLKEAIQVISCGYEDKSEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLNQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPLTSVPLLVYCTLPAICLLTGKFIVPEISNYASLVFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVDTNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIINIVGVIVGISDAINNGYDSWGPLFGRLFFAFWVIMHLYPFLKGLLGKQDRLPTIVLVWSILLASVLTLMWVRINPFVNRDGPVLEICGLNCDES 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01599 1098 Pfam Cellulose synthase 369 1084 IPR005150 GO:0016020|GO:0016760|GO:0030244
Bva05g01599 1098 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Bva05g01599 1098 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Bva05g01599 1098 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 511 666 IPR029044 -
Bva05g01599 1098 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 9 [UDP-FORMING]-RELATED 1 1095 - -
Bva05g01599 1098 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Bva05g01599 1098 Pfam Zinc-binding RING-finger 29 105 IPR027934 -
Bva05g01599 1098 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1095 - -
Bva05g01599 1098 SUPERFAMILY Nucleotide-diphospho-sugar transferases 382 913 IPR029044 -
Bva05g01599 1098 SUPERFAMILY RING/U-box 24 111 - -
Bva05g01599 1098 Coils Coil 688 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01599 Bva-Chr5 13017772 13024513 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01599 1 1095 Glycosyltransferase AT5G64740 82.058 0.0 1857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01599 K10999 - gmx:100794515 1996.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01599 05 13017772 13024513 Bva05g01599 05 13017772 13024513 ECH
Bva05g01599 05 13017772 13024513 Bva10g01111 10 7984366 7991411 ECH