Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01588 ATGGCCGCGAAAGCTATGAGCTTCGTTGTGACGGACCTTCCCAGCGGGTTTCGTCCAAACTCCCCACCCAACCGCTCAAAGGTTAGGGTTTCCATTGTCAGATGCTCCGTCCAAGTCTCCTCTGACAGTGCCGCCACTGTTTTGCCGCCATGGAAACAGTCTGATGCTAGACTTGTGCTAGAAGATGGTTCAATCTGGAGAGCCAAGTCATTCGGTGCTTCAGGGACTCAAGTTGGTGAAGTTGTTTTTAATACATCATTGACTGGGTATCAAGAAATTCTGACGGATCCTAGTTATGCTGGCCAGTTTGTGCTGATGACAAATCCACATATTGGAAATACTGGTGTAAATTTCGATGATGAAGAATCGGCTCAATGCTTCCTTGCTGGCCTAGTAATCAGAAGTTTGAGTCCGAGTACTTCAAACTGGAGATGTGCTGAATCACTAGGTGATTATTTGGCGAAAAGAAATGTCATGGGAATTTATGATGTTGACACACGCGCCATCACACGTAGATTAAGAGAAGATGGCAGCCTTATTGGTGTCTTGAGCACTGACAAATCAAAAACAGAAGAGGAACTACTTAAAATGTCTCGTTCATGGGACATTGTTGGTATTGATTTAATAAGTGGAGTGTCGTGCAAGTCTCCATATGAATGGGTCGACATAACAAAGCCAGATTGGGAATTTAACTCCAATGGAAGGTCTGGAGAGACTTTCCATGTTGTTGCTTATGATTTTGGAATTAAGCATAATATTCTTAAGCGTCTGGCATCACATGGCTGCAAAATCACCGTTGTACCATCTACATGGCCAGCATCCAACACATTAGAGATGAAGCCAGATGGAGTACTTTTCAGCAATGGTCCTGGAGACCCCTCTGCTGTTCCTTATGCAGTTGAAACAGTAAAGGATATCCTGGGGAAGGTGCCTGTTTTTGGAATTTGCATGGGCCATCAATTGATAGGCCAGGCATTGGGAGGTAAAACCTTCaagatgaaatttggtcaccaTGGCGGAAATCACCCAGTTCGTAACCTTCAAACTGGCCATGTTGAAATTAGTGCTCAGAACCACAACTATGCGGTTGACCCTGCATCACTTCCAGAAGGAGTGGCAGTTACTCATATCAATCTTAATGATGGAAGTTGTGCTGGTCTTGCTTTCCCTGCTCAAAAGCTCATGTCTCTACAATACCACCCTGAAGCATCCCCAGGACCTCATGACTCAGATTATGCTTTTAGGCAGTTTATAGAACTAATGAAGCaggagaataaaataaaagcttg 1289 0.4313 MAAKAMSFVVTDLPSGFRPNSPPNRSKVRVSIVRCSVQVSSDSAATVLPPWKQSDARLVLEDGSIWRAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGVNFDDEESAQCFLAGLVIRSLSPSTSNWRCAESLGDYLAKRNVMGIYDVDTRAITRRLREDGSLIGVLSTDKSKTEEELLKMSRSWDIVGIDLISGVSCKSPYEWVDITKPDWEFNSNGRSGETFHVVAYDFGIKHNILKRLASHGCKITVVPSTWPASNTLEMKPDGVLFSNGPGDPSAVPYAVETVKDILGKVPVFGICMGHQLIGQALGGKTFKMKFGHHGGNHPVRNLQTGHVEISAQNHNYAVDPASLPEGVAVTHINLNDGSCAGLAFPAQKLMSLQYHPEASPGPHDSDYAFRQFIELMKQENKIKA 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01588 429 PRINTS Glutamine amidotransferase superfamily signature 396 409 - -
Bva05g01588 429 PRINTS Glutamine amidotransferase superfamily signature 284 293 - -
Bva05g01588 429 PRINTS Glutamine amidotransferase superfamily signature 311 322 - -
Bva05g01588 429 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 311 327 - -
Bva05g01588 429 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 353 364 - -
Bva05g01588 429 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 281 295 - -
Bva05g01588 429 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 328 345 - -
Bva05g01588 429 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 242 256 - -
Bva05g01588 429 Pfam Carbamoyl-phosphate synthase small chain, CPSase domain 58 182 IPR002474 -
Bva05g01588 429 TIGRFAM CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 56 423 IPR006274 GO:0004088|GO:0006207|GO:0006541
Bva05g01588 429 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 241 427 - -
Bva05g01588 429 Pfam Glutamine amidotransferase class-I 245 419 IPR017926 -
Bva05g01588 429 PANTHER CARBAMOYLTRANSFERASE FAMILY MEMBER 28 425 - -
Bva05g01588 429 SUPERFAMILY Carbamoyl phosphate synthetase, small subunit N-terminal domain 55 199 IPR036480 -
Bva05g01588 429 Gene3D - 203 425 IPR029062 -
Bva05g01588 429 Hamap Carbamoyl-phosphate synthase small chain [carA]. 54 425 IPR006274 GO:0004088|GO:0006207|GO:0006541
Bva05g01588 429 SUPERFAMILY Class I glutamine amidotransferase-like 209 423 IPR029062 -
Bva05g01588 429 CDD GATase1_CPSase 242 418 IPR035686 -
Bva05g01588 429 PANTHER CARBAMOYL-PHOSPHATE SYNTHASE ARGININE-SPECIFIC SMALL CHAIN 28 425 - -
Bva05g01588 429 Gene3D - 53 202 IPR036480 -
Bva05g01588 429 SMART CPSase_sm_chain_2 54 184 IPR002474 -
Bva05g01588 429 PRINTS Anthranilate synthase component II signature 284 293 - -
Bva05g01588 429 PRINTS Anthranilate synthase component II signature 396 409 - -
Bva05g01588 429 PRINTS Anthranilate synthase component II signature 311 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01588 Bva-Chr5 12968906 12971973 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01588 K01956 - qsu:111995078 728.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01588 05 12968906 12971973 Bva05g01588 05 12968906 12971973 ECH