Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01578 ATGCTGAGCTGTGATGGAGGAGATAATGATGTGTTCTTTGAATCAGCAGATTGTCTGTCTCCTCAACATGAGTTAGGCAGTGACAAATTTGATTATGAAGTTTGGTTGAATGAACCTGGCAGTGTTAAAGAAAGAAGGCAGCGTTTTCTACAGGAAATGGGTTTTCTTGATACTTATAGGATGAGGGATTGCAGTGGAGCAGTCCCAAGTGGTGATCAAGTAGCTAACCAGCTTGTTTTCTCAGGTGGGAAACCAGCTTCTGAAGCAAATCACTTGTTCGATGTATTGAAAGAGCGTCCTGGGGATAATGTAGAGAAggtgtatgattttttttcctcagaTCCCAGAATCAGAAACACAGAAGCTGAGGCTCGAAAAGAACATGTGGATTTTGATACCGGCACCAAGAAAAGGCAAAGGTGGTGGAAGCGGTTTGTAAACACTAAGGTACGAGGAGAAGGAGGCAAAGCCACATCAAGGCTAAATACTGGGACTAATAGAAGTCGTAGAATAAAGGTAAGACAGAATAAGAAGAGGTGCATGGAATTCAGTGCATTATACACTGGACAAGAGATCAGAGCGCATAAAGGCTTAATCTGGACTATGAAGTTTAGTCCCAATGGCCAGTATCTAGCCAGCGGTGGTGAAGATGGGATTGTTCGCATTTGGCGTGTTATATCACAAGATACATCCACTAATTCTAACTCAGCACTGGGCAGTTTTATCAGCAAAGTAAAACAAGACATTTCCTATTCTTGGAAGAAGCAGTCAAGCCAAGCCCCCATCTTCCTTCCAAATAAGGTTCTTCAAATTGAGGAAACACCTCTTCAAGAATTCTATGGTCATTCCAGTGATATCTTGGATTTGGCTTGGTTTAATTCAGACattcttctttcttcttctatggATAAAACCGTTCGGTTGTGGCAAGTTGGTTGCAATCATTGTCTAAGTGTTTTCCCCCACAATGACTATGTGACGTGCATCCAATTCAATCCTGTTGATGAAAATTACTTCATCAGTGGGTCAATAGATGGTAAAGTTCGTATATGGGGGACATATGAAGGCCGAGTGGTTGACTGGGCAGATGTGCGAGATGTGATAACTGCTATAAGTTACCAGCCCGATGGAAAAGGTTTTGTAGTTGGTTCCCTTACAGGCACTTGTCGCTTTTACGTTGCTTCAGGCCGATATTACCAGCTTGAGGCACAGATTAATGTTCAAGGAAGCAAGAAAACCGCCAGCAACAAGATCACTGGCATTCAGTTTTCCAAGGATAAACATCAGAGAGTTATGATCACTTCAGAAGATTCAAAACTTCGTATATTGGACGGCATTGATGTTGTGGGGAAATACAGAGGTCTCTCAAATTCAGGAAGTCAGATGTGTGGCTCATTTACAAGTAGTGGAAAACATATAGTTTCAGTTGGAGAAGATGGTTGCGTGTATGTTTGGAATTACAGTGAGATGAAAAATGCGTCATCTAAACATACAAAATCTGAGCGCTCCTGTGAGTACTTCTTGTCAAAGGGTGTGACTGTTGCTATACCTTGGACGAGAGAACAAAGGGTCTCTCGCTGTCACAGTCATAGAGATTTGGAACGATTTTCTCTTGGTAATTGGTTCTCCATCGATGCTACATGCCGGGGTTCGACGACATGGCCTGAGGAGAAACTTCCAATTTGGGATTTTCCTTTTAGAGAAGGAGAATATGATCATCAGCAACAGCTAAATGTGAAAGATCCTTGTCAGTGTCATCACAGGTCTCTCCCAGAAACATGGGGACTATCCATTGTCACAGCCGCTTGTGATGGAACAATCAAGACATTCCACAACTTGGGATTGCCGGTTAGGCTCTA 1859 0.4169 MLSCDGGDNDVFFESADCLSPQHELGSDKFDYEVWLNEPGSVKERRQRFLQEMGFLDTYRMRDCSGAVPSGDQVANQLVFSGGKPASEANHLFDVLKERPGDNVEKVYDFFSSDPRIRNTEAEARKEHVDFDTGTKKRQRWWKRFVNTKVRGEGGKATSRLNTGTNRSRRIKVRQNKKRCMEFSALYTGQEIRAHKGLIWTMKFSPNGQYLASGGEDGIVRIWRVISQDTSTNSNSALGSFISKVKQDISYSWKKQSSQAPIFLPNKVLQIEETPLQEFYGHSSDILDLAWFNSDILLSSSMDKTVRLWQVGCNHCLSVFPHNDYVTCIQFNPVDENYFISGSIDGKVRIWGTYEGRVVDWADVRDVITAISYQPDGKGFVVGSLTGTCRFYVASGRYYQLEAQINVQGSKKTASNKITGIQFSKDKHQRVMITSEDSKLRILDGIDVVGKYRGLSNSGSQMCGSFTSSGKHIVSVGEDGCVYVWNYSEMKNASSKHTKSERSCEYFLSKGVTVAIPWTREQRVSRCHSHRDLERFSLGNWFSIDATCRGSTTWPEEKLPIWDFPFREGEYDHQQQLNVKDPCQCHHRSLPETWGLSIVTAACDGTIKTFHNLGLPVRL 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01578 619 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 279 311 - -
Bva05g01578 619 PANTHER WD REPEAT DOMAIN 44 1 619 IPR040324 -
Bva05g01578 619 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 319 351 - -
Bva05g01578 619 PRINTS G protein beta WD-40 repeat signature 211 225 IPR020472 -
Bva05g01578 619 PRINTS G protein beta WD-40 repeat signature 297 311 IPR020472 -
Bva05g01578 619 PRINTS G protein beta WD-40 repeat signature 339 353 IPR020472 -
Bva05g01578 619 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 351 IPR001680 GO:0005515
Bva05g01578 619 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 192 225 - -
Bva05g01578 619 Pfam WD domain, G-beta repeat 274 309 IPR001680 GO:0005515
Bva05g01578 619 Pfam WD domain, G-beta repeat 316 351 IPR001680 GO:0005515
Bva05g01578 619 Pfam WD domain, G-beta repeat 191 223 IPR001680 GO:0005515
Bva05g01578 619 Gene3D - 179 526 IPR015943 GO:0005515
Bva05g01578 619 SUPERFAMILY WD40 repeat-like 190 489 IPR036322 GO:0005515
Bva05g01578 619 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 619 - -
Bva05g01578 619 ProSiteProfiles Trp-Asp (WD) repeats profile. 279 311 IPR001680 GO:0005515
Bva05g01578 619 ProSiteProfiles Trp-Asp (WD) repeats profile. 192 233 IPR001680 GO:0005515
Bva05g01578 619 ProSiteProfiles Trp-Asp (WD) repeats profile. 465 495 IPR001680 GO:0005515
Bva05g01578 619 SMART WD40_4 445 486 IPR001680 GO:0005515
Bva05g01578 619 SMART WD40_4 272 310 IPR001680 GO:0005515
Bva05g01578 619 SMART WD40_4 404 444 IPR001680 GO:0005515
Bva05g01578 619 SMART WD40_4 185 224 IPR001680 GO:0005515
Bva05g01578 619 SMART WD40_4 355 393 IPR001680 GO:0005515
Bva05g01578 619 SMART WD40_4 313 352 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01578 Bva-Chr5 12916700 12920628 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01578 181 448 Miscellaneous Gene Families AT5G08390 22.581 9.16e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01578 K20241 - gmx:100819135 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01578 05 12916700 12920628 Bva05g01578 05 12916700 12920628 ECH