Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01567 ATGTCTCGCGGAAGTCCTTTCTACTTGTCGCGCCTACTCAGAGGTTGCCTACGTCATTCCGCTATCTCGCAAGCCAAGCAATGCCATGCCCAAATTCAGATCCTAGGCTTACTTCCCAGAATCACTCTTCAAACTGATCTCGTGTTAGTGTATTCTAGATGTGGGTTTCTTCATCATGCTCGCCAAGTTTTTGATAGAATGTTACACAGAGATATGCATTCATGGAATATCATAATTGCCTCGTATGTCGACAAATCGCTATACTCCGAGGCTTTGCTAGCTTTTAGTGAATTCAACTTGAGTGGTCTTCGGCCTGATCATTATACTTTGCCTCCGCTGTTTAAGGCCTCTGCCGCTGTCGGTAATATTTGTCTTGGTGCAACATGTCATGGCTGCGTGGTTAGGCTTGGATACGGGGACTATGTCATCGTGGGAAGTTCTTTGGTGGAATTTTATGCAAAATGTGGAGCGCTGGATGAAGCAAGGAGGGTATTTTCCAATATGCACTTTAGAGACTCTGTAGTATGGAATTTGATGATTTCAGGGTATGGAAGGGCTGGTTTCCATGCAGATGCTATGAATTGTTTAAGGGAGATGCTTCAGAATGGGCTGAAGATTGACCACATGATAGTTCCTAGCGTTTTAAATGCTTGCGGAAGGGAAGGTGACTTGATGAAAGGGAAACAAGTCCATGGTTATGTGGTGAGAAGTTTCATGCTTGATGTGGATGCTGCCATTGGGAATGCGTTAATCAATATGTATGGCAAGTGTGGATGCCTGCAGGACTCAGAAAAGGTTTTCAGGAACATGCGCCATGTGAATTTGGTTACGTGGACCACTATGATATCTTGTTATGGGATGCATGGAAAGGGAGATGAGTCTTTATCTCTGTTTAAGAAGATGATACAATTTGGGTTTACTCCAAACTCTGTCACATTTACAGCAATCTTAGCCAGTTGTAGCCATTCCGGTCTGATAGATCAAGGATGGCAAATTTTTAACTCTATTCATTTAGACTATAGGTTTGAGCCCAATGCGGAGCACTATGCTTGTATGGTGGATCTTTTAGGCCGATATGGGTATCTGGTGGAAGCAATTAAGTTATTGAAAACAATGAAGTCTTCAGTGACGCCAAAGGTTTGGGGTGCCCTTCTTGCAGGTTGTATGATGCACAGGAATGTTGAAATTGGAGAGATTGCCGCTGATCAGCTCTTCCAATTAGAACCAAATAACGCTAGCAACTACATAGCCCTgtgtaatatatatgaatctcGTGGTATGCTTGAGAAAGTTTCTAGAGTTAgagcaaaaatgaaagagttgGGTTTGGTCAAAGCTCCTGGTTGTAGCTGGATTAATCTGACAGGAAGGGTTAATAAATTCTACCAAGGGGACCTTTCTCATCCACTACCTCGGATGGTTTACGAAATATCAGATCAAATCAGTGACGCTTTGATATTGTCCGGTGATGCTGAATA 1478 0.4202 MSRGSPFYLSRLLRGCLRHSAISQAKQCHAQIQILGLLPRITLQTDLVLVYSRCGFLHHARQVFDRMLHRDMHSWNIIIASYVDKSLYSEALLAFSEFNLSGLRPDHYTLPPLFKASAAVGNICLGATCHGCVVRLGYGDYVIVGSSLVEFYAKCGALDEARRVFSNMHFRDSVVWNLMISGYGRAGFHADAMNCLREMLQNGLKIDHMIVPSVLNACGREGDLMKGKQVHGYVVRSFMLDVDAAIGNALINMYGKCGCLQDSEKVFRNMRHVNLVTWTTMISCYGMHGKGDESLSLFKKMIQFGFTPNSVTFTAILASCSHSGLIDQGWQIFNSIHLDYRFEPNAEHYACMVDLLGRYGYLVEAIKLLKTMKSSVTPKVWGALLAGCMMHRNVEIGEIAADQLFQLEPNNASNYIALCNIYESRGMLEKVSRVRAKMKELGLVKAPGCSWINLTGRVNKFYQGDLSHPLPRMVYEISDQISDALILSGDAE 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01567 492 PANTHER OS11G0213500 PROTEIN 8 484 - -
Bva05g01567 492 Coils Coil 487 492 - -
Bva05g01567 492 TIGRFAM PPR: pentatricopeptide repeat domain 311 346 IPR002885 -
Bva05g01567 492 TIGRFAM PPR: pentatricopeptide repeat domain 276 309 IPR002885 -
Bva05g01567 492 TIGRFAM PPR: pentatricopeptide repeat domain 174 207 IPR002885 -
Bva05g01567 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
Bva05g01567 492 Pfam PPR repeat 74 98 IPR002885 -
Bva05g01567 492 Pfam PPR repeat 49 70 IPR002885 -
Bva05g01567 492 Pfam PPR repeat 147 169 IPR002885 -
Bva05g01567 492 Pfam PPR repeat 174 204 IPR002885 -
Bva05g01567 492 Pfam PPR repeat 248 271 IPR002885 -
Bva05g01567 492 Pfam PPR repeat 349 374 IPR002885 -
Bva05g01567 492 Pfam PPR repeat family 274 320 IPR002885 -
Bva05g01567 492 Gene3D Tetratricopeptide repeat domain 231 460 IPR011990 GO:0005515
Bva05g01567 492 Gene3D Tetratricopeptide repeat domain 4 135 IPR011990 GO:0005515
Bva05g01567 492 PANTHER OS07G0578800 PROTEIN-RELATED 8 484 IPR045215 GO:0003723|GO:0009451
Bva05g01567 492 Pfam E motif 391 453 IPR046848 -
Bva05g01567 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 71 105 IPR002885 -
Bva05g01567 492 Gene3D Tetratricopeptide repeat domain 136 230 IPR011990 GO:0005515
Bva05g01567 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01567 Bva-Chr5 12857156 12858634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01567 7 481 Glycoside Hydrolase AT3G49170 34.792 2.83e-99 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01567 - - qsu:112010674 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01567 05 12857156 12858634 Bva05g01567 05 12857156 12858634 ECH