Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01540 ATGGGGAACACGGATTCGACGTATGAAAATTCTCaagatgatatttttaatcaagtCCCTCATACCGGGAGTTCAATGAATGCCAACTACGAGCAGCAGTCTTCTTATGCTGGAAATTCAGTAAATACTAGTTATCAGCCAGAATATTTTCATTCTAGGAGTCCAATGAATCATAGCTATCAACGACACTCTTCTTATTCTAGCAGTTCAGTGAATACTACCCATCGACGACGGCAGCACCCCACATATATAGCTGACAATTTCAGTTCGTTGGATCAGGTTGTTTCTGCTCTAAGAGAAGCTGGTCTGGaatcttcaaatttaattcttgGTATTGACTTCACCAAAAGCAACGAGTGGACAGGCAAATACTCATTCAACCGGAAAAGCCTTCATTCTCTTGGAAGCTCTCCTAATCCATATGAGCAAGCAATCTCTATCATTGGCCGTACTCTATCTTCTTTTGATGAAGATAATTTGATACCTTGTTTTGGATTTGGTGATGcATCTACACATGATCAGTCTGTATTCAGCTTTTATCCTGATAATCGCTATTGTCATGGTTTTGAGGAAGTACTTGCACGCTACCGAGAGATTGTTCCACACTTAAAATTGTCAGGTCCAACATCATTTTCCCCAGTAATTGATGCAGCAATTGACATTGTGGAGACAAACAATGGTCAATATCATGTTCTTGTCATTATTGCTGATGGccagGTTACAAGAAACCCAGATGTACCACGTGGAAAGCGTAGTCCACAAGAACATGCAACTATTAATTCTATTATTGATGCGAGTCACTATCCCCTCTCCATTATTTTGGTTGGAGTTGGAGATGGGCCATGGGATGAAATGCAGCACTTTGATGATAACATTACTCAGCGTGAATTCGACAACTTCCAGTTCGTGGACTTTACAAAGTTAATGTCTGAGAACACGGAGGCATCAAAGAAGGAAGCAGCATTCGCACTTGCTGCCCTTATGGAAATTCCAATTCAGTACCGGGCAACCCAAAACCTACAAGTTCCTAAATGCAGTGGAGAATCAGTAGGTTGTCAACGTAAAAGGCCTCTTCCCCCACCCAAGGAAGTGATTGATCATGATAATGCAGTTGTGGCAATTCCACCACGCAAGACAAACTTTGAATCAGTTGAGCCAACAGCTGTAGTGGAACCCGTATGCGATGTTTGCTTATCAAATCCAAAGGATATGGCTTTTGGATGTGGTCATATGACTTGCAAGGAATGTGGTGTGGCATTATCTTCATGTCCAATTTGCCGGCAGCAAATTACAACTCGCCTGAGACTATACACTTG 1316 0.4073 MGNTDSTYENSQDDIFNQVPHTGSSMNANYEQQSSYAGNSVNTSYQPEYFHSRSPMNHSYQRHSSYSSSSVNTTHRRRQHPTYIADNFSSLDQVVSALREAGLESSNLILGIDFTKSNEWTGKYSFNRKSLHSLGSSPNPYEQAISIIGRTLSSFDEDNLIPCFGFGDASTHDQSVFSFYPDNRYCHGFEEVLARYREIVPHLKLSGPTSFSPVIDAAIDIVETNNGQYHVLVIIADGQVTRNPDVPRGKRSPQEHATINSIIDASHYPLSIILVGVGDGPWDEMQHFDDNITQREFDNFQFVDFTKLMSENTEASKKEAAFALAALMEIPIQYRATQNLQVPKCSGESVGCQRKRPLPPPKEVIDHDNAVVAIPPRKTNFESVEPTAVVEPVCDVCLSNPKDMAFGCGHMTCKECGVALSSCPICRQQITTRLRLYT 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01540 438 SMART VWA_4 105 308 IPR002035 -
Bva05g01540 438 ProSiteProfiles Zinc finger RING-type profile. 394 427 IPR001841 -
Bva05g01540 438 PANTHER COPINE FAMILY PROTEIN 1 64 437 - -
Bva05g01540 438 CDD RING-HC_RGLG_plant 393 437 IPR045317 GO:0061630|GO:0070534
Bva05g01540 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 383 438 IPR013083 -
Bva05g01540 438 Pfam Zinc finger, C3HC4 type (RING finger) 393 432 - -
Bva05g01540 438 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG3 64 437 - -
Bva05g01540 438 MobiDBLite consensus disorder prediction 1 77 - -
Bva05g01540 438 CDD vWA_copine_like 84 334 IPR010734 -
Bva05g01540 438 Pfam Copine 130 341 IPR010734 -
Bva05g01540 438 SUPERFAMILY vWA-like 106 289 IPR036465 -
Bva05g01540 438 SUPERFAMILY RING/U-box 387 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01540 Bva-Chr5 12719083 12724555 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01540 K16280 - gmx:100791316 637.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01540 05 12719083 12724555 Bva05g01540 05 12719083 12724555 ECH