Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01318 ATGCTTATTAGTTATGAGTCTACCTCTGCCATTCCCCCAGCTAGGCTATTCAAGGCTCTTAACCTTGATGCTGATAATCTCATCCTCATGGTTGCACCGCAGGTCATTCAGAGTTCTCAAATTACCTTTGGCCATGTTTTCATCATCAACATCATGGGTGTCTTCGCTTTTGAGGAGGAGAGTACCTCACCTGTGGCTCCTGCTAGACTCTACAAAGCTTTAGCATTGGATGCTGACAACCTCATCCCAAATATCAATGACTCCATTAAGAATGTTGAAAACGTAGTAGGAAATGGAGAACCTGGAACCATCAAGAAGATCACTTTTGTTGAAGGTGGCAAAGAGTGCTATGTGAAGCACCAAATTGATGGTGTTGACAAGGATAACTTTGGATACAATTACAGCATAGTGGAAGGTCTTCCATTGCCAGACTCATGCGAGAAAATCTCAATTGAGACCAAGTTGGTGGCAGCTCCTAATGGTGGATCTATTGTGAAGCTTAACGTTAAGTTCTTTACCAAAGGTGATGCCCAATTGAATGAACAGGAAGCTAAGATTGGGAAGGAAAAGAGTGAAGCATTTTTCAAGTCTGTTGAGGCGTACCTTTTGGCCAATCCCAGttacaacta 629 0.4229 MLISYESTSAIPPARLFKALNLDADNLILMVAPQVIQSSQITFGHVFIINIMGVFAFEEESTSPVAPARLYKALALDADNLIPNINDSIKNVENVVGNGEPGTIKKITFVEGGKECYVKHQIDGVDKDNFGYNYSIVEGLPLPDSCEKISIETKLVAAPNGGSIVKLNVKFFTKGDAQLNEQEAKIGKEKSEAFFKSVEAYLLANPSYN 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01318 209 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 139 171 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Bva05g01318 209 Pfam Pathogenesis-related protein Bet v 1 family 52 205 IPR000916 GO:0006952
Bva05g01318 209 PANTHER ALLERGEN PRU AV, PUTATIVE-RELATED 53 206 - -
Bva05g01318 209 CDD Bet_v1-like 57 202 - -
Bva05g01318 209 Gene3D - 1 51 IPR023393 -
Bva05g01318 209 Gene3D - 53 209 IPR023393 -
Bva05g01318 209 PRINTS Major pollen allergen Bet V1 signature 116 135 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Bva05g01318 209 PRINTS Major pollen allergen Bet V1 signature 135 148 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Bva05g01318 209 PRINTS Major pollen allergen Bet V1 signature 77 87 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Bva05g01318 209 PRINTS Major pollen allergen Bet V1 signature 54 74 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Bva05g01318 209 PRINTS Major pollen allergen Bet V1 signature 160 176 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Bva05g01318 209 PRINTS Major pollen allergen Bet V1 signature 100 109 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Bva05g01318 209 PRINTS Major pollen allergen Bet V1 signature 194 204 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Bva05g01318 209 PANTHER - 3 44 - -
Bva05g01318 209 PANTHER ALLERGEN PRU AV, PUTATIVE-RELATED 3 44 - -
Bva05g01318 209 PANTHER - 53 206 - -
Bva05g01318 209 SUPERFAMILY Bet v1-like 53 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01318 Bva-Chr5 6939860 6950659 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01318 - - gmx:100500525 204.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g00257 06 4228064 4229053 Bva05g01318 05 6939860 6950659 BWGD
Bva05g01318 05 6939860 6950659 Bva05g01318 05 6939860 6950659 ECH