Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01307 ATGAAGATCAACGTCAACTCGATCGCTCCCAAAGTCGAGGTTGATAATCGTATCCCCCTCCGTTATTACTACAGGATTGCCGATAACCTCCTCAAACAGGCCAATGTCTACCGGGAGGAGAATAATGTCATTGACTTGTATATCATACTTCTTAGATTTTCAAGtttGGTTTCTGAAACTATACCTTATCATCGAGACTACCAAGTATCACTTACTAAAGAAAGAGCAGCATATAAGAAGAGGTTGCTAGCCGTACTGGATGAGCTTGAATCTTTGCAACCAGAATTCAAACAACGGGTGGATGAAATGAATGACTTTCATGGTAGAGCTCCGTTACCTGAGGATAATGATTCCAGCAAGGCTTTGTCTAGTTCATTGGGTTCATCTTTAGAATGGCCTGCTGTCAATAAAAGTTCTTACTTGAACACAGATTTTAAACAGCTGCAGTCTGCTGGACCGGGTCCACAGCCTTCATGGAAGTATAATAACAGTGCTCATACTTCATATTCCATGCCAATTGATAAGAAGTTTCAGAAACTATCTATTAGTATGCCATTGCCAAAGAAGGAGACCTTATCCAGACACTCAATTTTAGGACCAAATGGTCTTCGGGGCCAGTGGCTTGCACCAAGTGCAGAAATAAAGGTTCAGTATCCAAGCAGTAGTGATTTGACAACAATTGAGGATTCCAGGCTGAATTCGGCTGAACAATATGACCTTGTGGCTGTTAAAGATGGTAATACTGGAGCAGTCTCGTCCACAATGGAGTCAGTTCTCTCCTTGGATGATGGAAGATGGCCTCGTCCTGTTGAGGAGTCCTGTTCCATTGCATTAAACGAGCCAAGGGAGGATCCTCTCCAATTGCTCAACATTAAGCAACCTTCTCCTCCTCCTGTTCTTGCTAGGATGCATCAGGAATATGCTCCAATTCCTCCTTCAAAAGTTGCAGATCCCAGACCAGGGCCAGCTAAATCTTCTCAGGATTCTGCATTGGGTCCTTCTACATATCAACACCTACACATTCCTGTCAAAATGATGGATGAATTTTTGAGATTGGCTCTGGAAAATACCCGGAAGAACTTAGAGACATGTGCTGTACTTGCCGGGTCTTTGAAAAACAGGGTTTTCCAAATTAACACACTTATAATCCCAAAGCAGGAGTCAACTTCTGACTCGTGTTCTACAttgaatgaagaagaaatatttgcAGTCCAAGATGATTTATCACTTTTTACTCTAGGCTGGATTCATACGCACCCATCTCAAACTTGTTTCATGTCATCAGTTGATTTACACACTCATTACTCATACCAGGTCATGTTACCAGAGGCAATTGCAATTGTCATGGCCCCTACAGACACAACAAgTCCACACGGCATATTCCATCTCTCTGACCCAGGTGGTGTGTCTGTAATCCGTAATTGTGAACAAAGTGGATTTCATCCTCACGAGGAGCCGTCTGACGGAAGCCCTATTTACGAGCACTGTTCTCATGTCTATATGAACGCTAACTTGAAATTTGACGTGGTGGACCTTCGATTCCGATG 1547 0.424 MKINVNSIAPKVEVDNRIPLRYYYRIADNLLKQANVYREENNVIDLYIILLRFSSLVSETIPYHRDYQVSLTKERAAYKKRLLAVLDELESLQPEFKQRVDEMNDFHGRAPLPEDNDSSKALSSSLGSSLEWPAVNKSSYLNTDFKQLQSAGPGPQPSWKYNNSAHTSYSMPIDKKFQKLSISMPLPKKETLSRHSILGPNGLRGQWLAPSAEIKVQYPSSSDLTTIEDSRLNSAEQYDLVAVKDGNTGAVSSTMESVLSLDDGRWPRPVEESCSIALNEPREDPLQLLNIKQPSPPPVLARMHQEYAPIPPSKVADPRPGPAKSSQDSALGPSTYQHLHIPVKMMDEFLRLALENTRKNLETCAVLAGSLKNRVFQINTLIIPKQESTSDSCSTLNEEEIFAVQDDLSLFTLGWIHTHPSQTCFMSSVDLHTHYSYQVMLPEAIAIVMAPTDTTSPHGIFHLSDPGGVSVIRNCEQSGFHPHEEPSDGSPIYEHCSHVYMNANLKFDVVDLRFR 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01307 515 ProSiteProfiles MPN domain profile. 339 469 IPR037518 -
Bva05g01307 515 PANTHER AMSH-LIKE PROTEASE 2 513 - -
Bva05g01307 515 Gene3D Cytidine Deaminase, domain 2 323 514 - -
Bva05g01307 515 SMART pad1_6 338 466 IPR000555 GO:0005515|GO:0008233|GO:0008237
Bva05g01307 515 MobiDBLite consensus disorder prediction 310 334 - -
Bva05g01307 515 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 3 2 513 - -
Bva05g01307 515 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 335 442 IPR000555 GO:0005515|GO:0008233|GO:0008237
Bva05g01307 515 Gene3D - 3 120 - -
Bva05g01307 515 SUPERFAMILY USP8 N-terminal domain-like 11 116 - -
Bva05g01307 515 SUPERFAMILY JAB1/MPN domain 338 469 - -
Bva05g01307 515 CDD MPN_AMSH_like 336 513 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Bva05g01307 515 Pfam USP8 dimerisation domain 7 99 IPR015063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01307 Bva-Chr5 6860168 6866235 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01307 K11866 - gmx:100812784 795.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01307 05 6860168 6866235 Bva05g01307 05 6860168 6866235 ECH