Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01267 ATGTGTCCCTCTGGTCAGAGTCTCCGTCATCACAATGTCTCCTCCGCTGCCAGCTCATCTTTCCGAAAGGCATTCGACGTTCTCGACGTTGATCACGACGGAAAAATAAGCAGCAACGATCTTTGCACGTTTTACTCTGGCTTTGGCCGCGACATCGCCGGCAACGAGGACGTGATTGGGACAATGATGACGGTGGCGGACACCAACAAGGACGGGTTCGTGGAGTACGACGAGTTCGAGCGCGTGCTTCTCGGAAATTCCCAGAAAAGACCGTTAGGTTCTACGGTTATGGAGGATGTGTTCAGAATGATGGACAAGGACGGAGACGGCAAGCTTAGCCATAATGATCTGAAGAGCTACATGGCTTGGGCTGGCTTCGATGCCACGGACGAAGATATCAATGCTATGATTAAATTAGGAGGCGCTGATCAAAACGGCGGCGTCAGCTTCGATGGATTGCTTCAAATATTGGCCGTTGATATTGTCGTGTA 491 0.5092 MCPSGQSLRHHNVSSAASSSFRKAFDVLDVDHDGKISSNDLCTFYSGFGRDIAGNEDVIGTMMTVADTNKDGFVEYDEFERVLLGNSQKRPLGSTVMEDVFRMMDKDGDGKLSHNDLKSYMAWAGFDATDEDINAMIKLGGADQNGGVSFDGLLQILAVDIVV 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01267 163 CDD EFh 21 79 IPR002048 GO:0005509
Bva05g01267 163 ProSiteProfiles EF-hand calcium-binding domain profile. 92 127 IPR002048 GO:0005509
Bva05g01267 163 Gene3D - 89 159 - -
Bva05g01267 163 PANTHER CALCIUM BINDING PROTEIN 1 161 - -
Bva05g01267 163 ProSitePatterns EF-hand calcium-binding domain. 67 79 IPR018247 -
Bva05g01267 163 ProSitePatterns EF-hand calcium-binding domain. 105 117 IPR018247 -
Bva05g01267 163 SMART efh_1 96 124 IPR002048 GO:0005509
Bva05g01267 163 SMART efh_1 132 160 IPR002048 GO:0005509
Bva05g01267 163 SMART efh_1 58 86 IPR002048 GO:0005509
Bva05g01267 163 SMART efh_1 20 48 IPR002048 GO:0005509
Bva05g01267 163 ProSiteProfiles EF-hand calcium-binding domain profile. 16 51 IPR002048 GO:0005509
Bva05g01267 163 Pfam EF-hand domain pair 22 81 IPR002048 GO:0005509
Bva05g01267 163 Pfam EF-hand domain pair 96 156 IPR002048 GO:0005509
Bva05g01267 163 PANTHER CALMODULIN-RELATED PROTEIN 97A-LIKE 1 161 - -
Bva05g01267 163 ProSiteProfiles EF-hand calcium-binding domain profile. 54 89 IPR002048 GO:0005509
Bva05g01267 163 ProSitePatterns EF-hand calcium-binding domain. 29 41 IPR018247 -
Bva05g01267 163 SUPERFAMILY EF-hand 11 157 IPR011992 -
Bva05g01267 163 Gene3D - 4 88 - -
Bva05g01267 163 CDD EFh 98 158 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01267 Bva-Chr5 6659451 6660083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g01267 1 158 EF-hand Containing Proteins AT5G49480 51.515 1.36e-52 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01267 K02183 - pvy:116115780 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01267 05 6659451 6660083 Bva05g01267 05 6659451 6660083 ECH