Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01249 ATGGAGGCACTCCAACAAATTTCCTCGGTAGCTTGTCTGCTACCAAATGTTCCGAAAATGATGGTAGGCAATGGAATTAGAGTGAATTGCAATCCCGGCTTGATATTCGCAAACGGGCACCATTCGTTTTCTTCGTCTTTTTCGAGACAATCAGTATCCCTGATTGTGAGGGCTAGGAAGAAcaacaagaaagaagatacTCATAGCTTTGTACCGAAACCAGACGAGGCCACAGGGTTTTTTCCCGAAGCTGTGTTGCTTAAACAGaaGAAAGTTCAGGAAGACGGTCAACTTCTCCCGGAGTTTGCAGACGCTGAAGAAAAACAACTCTATGAATCACTGATGCTTGAGCTGGAAAGTGATATGGGTGTAGACCAAACGCGGCACTATGAAGTTGTTTACTTAATTCATGAGAAGCATGCAGAAGAGGTTGCGGATGTCAACgagaaaattcaaaCCTTTTTGAGGGAGAAGAAAGGCAGGGTGTGGAGACTGAACGATTGGGGTATGAGAAGACTGGCTTACCAAATAAAGAAAGCGAAGAATGCGAACTACATCTTGATGAACTTCGAGTTGGATGCCAAATATATCAACGAGTTCAAGAGTCTGTTGGACAAAGATGAAAGAGTCATTCGTCATCTTGTCATAAAGATGGATGAAGCAGTCACAGAAGATTGCCCTCCGCCTCCTGAATTCCACACATTGCGCTCAAACATGTATGATGATGACGAGGAGGAAGAATATGAGGATGATGAttgggatgaagaagatgagATGGATGGCTATGATGATGACGATGGAgatgaaattattgttgttgatgttgatgatgatgatgaaggtAGAGAATATAGTCATGATACAATTGGCAATGTAACACAGCCAGAAATACAGAAGTTGAGGGCTGAGAAAGTAGGTAGGTA 923 0.3933 MEALQQISSVACLLPNVPKMMVGNGIRVNCNPGLIFANGHHSFSSSFSRQSVSLIVRARKNNKKEDTHSFVPKPDEATGFFPEAVLLKQKKVQEDGQLLPEFADAEEKQLYESLMLELESDMGVDQTRHYEVVYLIHEKHAEEVADVNEKIQTFLREKKGRVWRLNDWGMRRLAYQIKKAKNANYILMNFELDAKYINEFKSLLDKDERVIRHLVIKMDEAVTEDCPPPPEFHTLRSNMYDDDEEEEYEDDDWDEEDEMDGYDDDDGDEIIVVDVDDDDEGREYSHDTIGNVTQPEIQKLRAEKVGR 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01249 307 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 90 242 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Bva05g01249 307 TIGRFAM S6: ribosomal protein bS6 128 219 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Bva05g01249 307 MobiDBLite consensus disorder prediction 241 269 - -
Bva05g01249 307 Hamap 30S ribosomal protein S6 [rpsF]. 127 220 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Bva05g01249 307 MobiDBLite consensus disorder prediction 225 269 - -
Bva05g01249 307 Pfam Ribosomal protein S6 129 217 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Bva05g01249 307 PANTHER 28S RIBOSOMAL PROTEIN S6, MITOCHONDRIAL 90 242 - -
Bva05g01249 307 Gene3D - 123 225 IPR014717 -
Bva05g01249 307 SUPERFAMILY Ribosomal protein S6 128 227 IPR035980 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Bva05g01249 307 CDD bS6 129 217 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Bva05g01249 307 Coils Coil 137 157 - -
Bva05g01249 307 ProSitePatterns Ribosomal protein S6 signature. 169 178 IPR020815 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01249 Bva-Chr5 6543857 6546234 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01249 - - gmx:100790128 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01249 05 6543857 6546234 Bva05g01249 05 6543857 6546234 ECH