Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01237 ATGGTGAAGGTTCGCATGAACACGGCCGATGTGGCCGCAGAGGTAAAATGCTTGCGAAGGTTAATCGGAATGCGATGTTCGAACGTCTATGATCTCACTCCCAAGACATACGTATTCAAGCTTATGAATAGTAGTGGAGTCACCGAGTCTGGGGAGAGCGAGAAGGTTTTGTTGTTGATGGAAAGTGGTGTTAGGTTGCACACTACTGTGTATATGCGtGACAAAAGCAATACTCCTTCTGGTTTTACTCTCAAATTGAGGAAGCATATTCGGACTAGAAGGCTTGAAGATGTACGGCAGCTTGGGTATGATCGGattattctctttcaatttggACTGGGTGAAAATGCACACTTTGTTATTTTGGAGCTGTATGCGCAGGGGAACATCCTCCTCACAGATTCTAATTTTACTGTTATGACTCTACTTCGATCCCACAGGGATGATGATAAAGGGGTTGCAATCATGTCACGCCATCGTTATCCTACTGAAATTTGTCGAGTTTTTGAGCGAACAACTGTTACAAAGTTGCAGACAGCACTAAAATCTTCTAAGGAAGCTGATAATGAGGAGGCTGTTAAGGTCAGTGGACACGGGAGTGATGTttctaaaacagaaaaagagaagcagGGAACCCGCAAAGGTGGAAAGTCATCTACCTCATTGAAAAATGTTCTTGGGGAGGCATTGGGTTATGGACCTGCCCTTTCtgaacatataattttagatgCTGGCCTGATCCCCAATacaaaaattccaaaagaTAATAGTTGGGATGACGTTACCATTCAGGCTTTGGTCCAAGCTGTTTCAAAGTTTGAGGACTGGATGGAGGATATCATTTCTGGTGATAGAGTTCCTGAAGGGTACATTTTGATGCAGAGCAAAAGTTTGGGGAAGGATTCTTTCCCATCTGAGTCAGGAAATGTTAGCCAGATATACGATGAGTTCTGCCCAATCTTACTAAACCAGTTTAAATCAAGGGATTATACAAAGTTTGAGACATTTGATGCAGCTTTGGATGAGTTCTACAGCAAAATTGAGGGTCAAAGGGCTGAACAACagcaaaaagcaaaagaaaactcaGCAATTCagaaacttaataaaatacgCCAGGATCAGGAAAATCGAGTGTGCACCCTGAGTAAAGAGGTAGATGACTGTGTTAGAAAGGCAGAATTAATAGAATACAACTTAGAAGATGTGGATGCTGCTATATTAGCTGTTCGTGTAGCTCTTGCAAAGGGTATGAACTGGGATGACCTTGCTCGGATggtgaaggaagaaaaaaaagctgGAAATCCTGTGGCTGGTCTCATTGACAAACTTCATCTTGAGAGGAACTGCATGACATTGCTACTGAGCAATAATCTTGATGAAATGGATGATGATGAGAAAACACTCCCAGTGGATAAGATTGAAGTTGATTTAGCACTCTCGGCGCATGCCAATGCTCGGAGGTGGTATGAACTTAAAAAGAAGCAAGAGACCAAACAGGAGAAGACTAAAACTGCACATGAAAAGGCTTTTAAAGCTGCTGAGAGAAAGACTCGTCAACAGCTCTCACAGGAAAAAACTGTTGCCACAATTTCTCACATGCGCAAAGTTCACTGgtttgagaaatttaattgGTTTATCAGTAGTGAGAACTACTTGGTTATCAGTGGACGTGATGCTCAACAGAATGAGATGATAGTGAAGCGTTACATGTCTAAAGGAGATCTGTATGTTCATGCTGATTTGCACGGAGCTTCAAGTACTATTATCAAGAATCACAAGCCTGGGCAACCAGTTCCTCCTCTGACCCTAAACCAAGCAGGATGTTTCACAGTTTGCCATAGTCAGGCATGGGATTCAAAAATTGTTACTAGTGCCTGGTGGGTTTATCCTCACCAGGTAAGCAAAACTGCTCCTACAGGGGAATATCTGACTGTTGGAAGTTTCATGATCcggggaaagaaaaattttcttccacCACACCCGCTTATTATGGGATTTGGGCTGCTCTTTCGCTTGGATGAGAGTTCCTTGGGGTCGCATTTAAATGAAAGAAGGGTAAGAGGAGAGGAGGAAGCAatagatgatgatgaagaagctgGCCCTCTAATGGAAAAATCTGATTCTGAGTCGGAGAATGATGTCAGAGATGGACAACCTGCAGAGGAATTGGAAGGAAATGGTAATATCTCTACAGATTTACATTTACTACCTTCAGAAGACGTGCCCGCAGATTCATCTCAGACTAGTTTGGTTGCCTCCAGTGCTGAAACTACAGTTTCATATGAATTTCATAAAGAGAATTTATCTGATATTAATGGAAATAGTATGGCATCCGTGACACCCCAACTTGAGGAACTTCTTGATCGTGCTCTAGGACTTGGATCTGCTGCTAAATCAGACAGAGGTTATGGACTTGAAAATCCTGAGGTTGATCAGGGTGAGGCACACCAATTTGAAGAGAACAAAGCTGCTGTAAGGGATAAGCCTTACATCTCAAAAGccgaaagaagaaaacttaagaaagaaaaaagtggtGTTGCAGATTCAAATGTTGAATATGGAAAACATGAATCAAagttatctcatacttctgccAGTCAACctgataaagaaattaaaagttcCAAGACCGGTGGTGGAAAAAGCCGTGGTCAGAGGGgcaaacttaaaaagataaaagagaagTATGCTGACCAAGATGAGGAAGAAAGAAGCATCCGAATGGCTTTATTGGCTTCTGCTGgaaaatcaaacaagaatGAAGTGACATCAGATGTGACTGAAGCATCAGTGGAAGTGAAGAAATCTGATAGTGTTGAGGCTCCAAAAATATGTTACAAGTGCAAGAAGGTGGGTCACTTATCACGGGATTGTAAAGACCAACCAGATGATCTGTTACACAGTCATGCAAGTGGTGGAGCTGAAGAAAATCCCAACACTTCTGAGGCTGACAGGGTGGCAATGGAAGAGGATGATATTCATGAAATAggtgaagaagagaaaggaaaactGAATGATGTGGATTACTTGACAGGGAATCCACTTCCCAATGACATTCTCTTATATGCCGTGCCTGTCTGTGGTCCTTATAGTGCAGTTCAGTCATACAAGTATCGGGTGAAGATTATTCCTGGAACGgcaaagaaagggaaagCTGCGAAAACTGCAATGAATTTGTTCAGCCACATGCCAGAAGCAACGAGCAGGGAGAAGGAATTGATGAAAGCTTGCACTGATTCCGAGATGGTTGCTGCCATTATTGGTAATGTGAAGATATCAGCAGCTGGCCTTGCTCAATTGAAgcagaagcaaaagaaaggcAAGAAGAGTAATAAAGAGGCAAGTTA 3347 0.3836 MVKVRMNTADVAAEVKCLRRLIGMRCSNVYDLTPKTYVFKLMNSSGVTESGESEKVLLLMESGVRLHTTVYMRDKSNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGENAHFVILELYAQGNILLTDSNFTVMTLLRSHRDDDKGVAIMSRHRYPTEICRVFERTTVTKLQTALKSSKEADNEEAVKVSGHGSDVSKTEKEKQGTRKGGKSSTSLKNVLGEALGYGPALSEHIILDAGLIPNTKIPKDNSWDDVTIQALVQAVSKFEDWMEDIISGDRVPEGYILMQSKSLGKDSFPSESGNVSQIYDEFCPILLNQFKSRDYTKFETFDAALDEFYSKIEGQRAEQQQKAKENSAIQKLNKIRQDQENRVCTLSKEVDDCVRKAELIEYNLEDVDAAILAVRVALAKGMNWDDLARMVKEEKKAGNPVAGLIDKLHLERNCMTLLLSNNLDEMDDDEKTLPVDKIEVDLALSAHANARRWYELKKKQETKQEKTKTAHEKAFKAAERKTRQQLSQEKTVATISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDLYVHADLHGASSTIIKNHKPGQPVPPLTLNQAGCFTVCHSQAWDSKIVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEEAIDDDEEAGPLMEKSDSESENDVRDGQPAEELEGNGNISTDLHLLPSEDVPADSSQTSLVASSAETTVSYEFHKENLSDINGNSMASVTPQLEELLDRALGLGSAAKSDRGYGLENPEVDQGEAHQFEENKAAVRDKPYISKAERRKLKKEKSGVADSNVEYGKHESKLSHTSASQPDKEIKSSKTGGGKSRGQRGKLKKIKEKYADQDEEERSIRMALLASAGKSNKNEVTSDVTEASVEVKKSDSVEAPKICYKCKKVGHLSRDCKDQPDDLLHSHASGGAEENPNTSEADRVAMEEDDIHEIGEEEKGKLNDVDYLTGNPLPNDILLYAVPVCGPYSAVQSYKYRVKIIPGTAKKGKAAKTAMNLFSHMPEATSREKELMKACTDSEMVAAIIGNVKISAAGLAQLKQKQKKGKKSNKEAS 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01237 1115 Pfam NFACT protein C-terminal domain 1001 1093 IPR021846 -
Bva05g01237 1115 Pfam NFACT N-terminal and middle domains 10 161 - -
Bva05g01237 1115 Pfam NFACT N-terminal and middle domains 218 533 - -
Bva05g01237 1115 Gene3D - 938 968 - -
Bva05g01237 1115 SUPERFAMILY Retrovirus zinc finger-like domains 942 963 IPR036875 GO:0003676|GO:0008270
Bva05g01237 1115 SMART c2hcfinal6 944 960 IPR001878 GO:0003676|GO:0008270
Bva05g01237 1115 PANTHER - 3 1103 - -
Bva05g01237 1115 ProSiteProfiles Zinc finger CCHC-type profile. 945 960 IPR001878 GO:0003676|GO:0008270
Bva05g01237 1115 MobiDBLite consensus disorder prediction 188 220 - -
Bva05g01237 1115 MobiDBLite consensus disorder prediction 814 866 - -
Bva05g01237 1115 MobiDBLite consensus disorder prediction 814 903 - -
Bva05g01237 1115 Gene3D ibrinogen binding protein from staphylococcus aureus domain 6 163 - -
Bva05g01237 1115 Pfam Zinc knuckle 944 959 IPR001878 GO:0003676|GO:0008270
Bva05g01237 1115 MobiDBLite consensus disorder prediction 867 881 - -
Bva05g01237 1115 MobiDBLite consensus disorder prediction 681 751 - -
Bva05g01237 1115 MobiDBLite consensus disorder prediction 703 720 - -
Bva05g01237 1115 MobiDBLite consensus disorder prediction 962 985 - -
Bva05g01237 1115 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 3 1103 - -
Bva05g01237 1115 Coils Coil 357 377 - -
Bva05g01237 1115 MobiDBLite consensus disorder prediction 188 214 - -
Bva05g01237 1115 Pfam NFACT protein RNA binding domain 541 652 IPR008532 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01237 K24971 - gmx:100803745 1739.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01237 05 6466831 6475700 Bva05g01237 05 6466831 6475700 ECH