Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01236 ATGGCGTCTCTAGCTCAGCAATTCACCGGCCTCAGGTGCCCACCACTCTCTTCTTCTGGCCTCTCAAAGGGGAAACCGTTCCCTTCTAAGCAAATGCAAAACCACAAGCGCACTGTGATTCCAGTCGTCGCATCAATAGCAATCTCCACTGCCCAGGACAAAGAGAGGCTCAAGCTCAAAGAACTCTTTGAAGAAGCCCATGACAGGTGCCGCACTGCTCCCATGGAAGGTGTTGCCTTCACTGTAGAAGACTTCAATTCCGCGCTGGAGAAGTATGATTTTGATTCTGAAATTGGGACTACGGTAAAAGGCACTGTGTTCCGCACAGATGGCAATGGAGCTCTTGTCGACATTACTGCAAAGTCTTCAGCATACTTACCCCTCCAAGAGATATGCATCCacagaattaaaaatgtagAAGAAGCAGGCATAGTTCCTGGCTTGAGAGAGGAGTTTATGATCATTGGTGAAAATGAAGCCGATGACAGCTTGATCTTAAGTTTAAGGGCTCTCCAGTATGACCTTGCATGGGAACGCTGTAGACAGCTTCAAGCGGAAGATGTTGTTGTGAAGGGTAAGGTTATTGGTGGAAACAATGGTGGAGTGGTGGCTGTGGTGGAAGGCCTTAGAGGATTTGTTCCTTTCTCACAGATATCATCGaAATCAACTGCAGAAGAGCTTCTTGAGAAGGAGCTCCCTCTTAAGTTTGTAGAGGTGGATGGGGAACAGTCTAGACTCATCCTCAGTAACCGCAAGGCCATGGCTGATAGTCAGGCGCAGCTAGGAATTGGATCAGTGGTCACTGGCAGTGTTGAAAGCCTAAAACCATATGGAGCCTTCATTGACATTGGTGGAATCAACGGTCTTCTTCATGTCAGTCAGATCAGTCATGATCGTGTAACAGATATTGAGACTGTTCTTCAACCTGGGGATATTCTCAAGGTTATGATATTAAGTCATGATCGGGAGAGGGGCCGAGTAAGTCTTTCCACAAAGAAGTTAGAACCAACACCTGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCGGAGGAGATGGCTCAAACATTTAGACAGAGAATTGCTCAAGCTGAGGCTATGGCTCGAGCGGACATGCTAAGATTCCAGCCTGAGAGTGGATTAACTCTCAGCGGTGACGGAATATTGGGACCACTCACTTCAGACTTAGCTGAGGAGGGGTTGGATCTGAGTGATGTGCCTGCCGCCGAATA 1238 0.4717 MASLAQQFTGLRCPPLSSSGLSKGKPFPSKQMQNHKRTVIPVVASIAISTAQDKERLKLKELFEEAHDRCRTAPMEGVAFTVEDFNSALEKYDFDSEIGTTVKGTVFRTDGNGALVDITAKSSAYLPLQEICIHRIKNVEEAGIVPGLREEFMIIGENEADDSLILSLRALQYDLAWERCRQLQAEDVVVKGKVIGGNNGGVVAVVEGLRGFVPFSQISSKSTAEELLEKELPLKFVEVDGEQSRLILSNRKAMADSQAQLGIGSVVTGSVESLKPYGAFIDIGGINGLLHVSQISHDRVTDIETVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSGDGILGPLTSDLAEEGLDLSDVPAAE 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01236 412 Pfam S1 RNA binding domain 185 249 IPR003029 GO:0003676
Bva05g01236 412 Pfam S1 RNA binding domain 263 332 IPR003029 GO:0003676
Bva05g01236 412 Pfam S1 RNA binding domain 97 169 IPR003029 GO:0003676
Bva05g01236 412 CDD S1_RPS1_repeat_ec1_hs1 99 169 - -
Bva05g01236 412 Gene3D - 180 257 IPR012340 -
Bva05g01236 412 Gene3D - 81 179 IPR012340 -
Bva05g01236 412 PANTHER 30S RIBOSOMAL PROTEIN S1 1 411 - -
Bva05g01236 412 SUPERFAMILY Nucleic acid-binding proteins 94 194 IPR012340 -
Bva05g01236 412 SUPERFAMILY Nucleic acid-binding proteins 182 255 IPR012340 -
Bva05g01236 412 ProSiteProfiles S1 domain profile. 264 332 IPR003029 GO:0003676
Bva05g01236 412 CDD S1_RPS1_repeat_hs4 264 332 - -
Bva05g01236 412 SUPERFAMILY Nucleic acid-binding proteins 263 342 IPR012340 -
Bva05g01236 412 ProSiteProfiles S1 domain profile. 99 169 IPR003029 GO:0003676
Bva05g01236 412 SMART S1_6 97 169 IPR022967 -
Bva05g01236 412 SMART S1_6 185 251 IPR022967 -
Bva05g01236 412 SMART S1_6 262 332 IPR022967 -
Bva05g01236 412 Coils Coil 349 369 - -
Bva05g01236 412 MobiDBLite consensus disorder prediction 15 34 - -
Bva05g01236 412 CDD S1_RPS1_repeat_ec2_hs2 187 251 - -
Bva05g01236 412 Gene3D - 258 336 IPR012340 -
Bva05g01236 412 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 1 411 - -
Bva05g01236 412 ProSiteProfiles S1 domain profile. 187 251 IPR003029 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01236 Bva-Chr5 6463558 6466355 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01236 K02945 - qsu:112022344 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01236 05 6463558 6466355 Bva05g01236 05 6463558 6466355 ECH